View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0654_low_4 (Length: 390)

Name: NF0654_low_4
Description: NF0654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0654_low_4
NF0654_low_4
[»] chr3 (1 HSPs)
chr3 (42-379)||(47151175-47151509)
[»] chr4 (6 HSPs)
chr4 (303-378)||(39337250-39337325)
chr4 (332-378)||(23703224-23703270)
chr4 (304-376)||(7107762-7107834)
chr4 (332-376)||(38157886-38157930)
chr4 (332-376)||(55018623-55018667)
chr4 (304-376)||(35785838-35785910)
[»] chr8 (1 HSPs)
chr8 (304-376)||(21143337-21143409)
[»] chr1 (1 HSPs)
chr1 (332-376)||(52794464-52794508)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 42 - 379
Target Start/End: Complemental strand, 47151509 - 47151175
Alignment:
Q  42 agaagaacaccttcacatctcttaaggaactcccaacaaattagatgatctttcaatccaagtcttcttatgataaaatcaataaaagaaagaggtgttg 141  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47151509 agaagaacaccttcacatctcttaagaaactcccaacaaattagatggtctttcaatccaagtcttcttatgataaaatcaataaaagaaagaggtgttg 47151410  T
Q  142 ctggactcatcttccatccaagagttgaaagtatcaaaatttccatctttttaatcgtttttgcttcaaacaagtatctactctcttcaacctaaacaaa 241  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47151409 ctggattcatcttccatccaagagttgaaagtatcaaaatttccatctttttaatcgtttttgcttcaaacaagtatctactctcttcaacctaaacaaa 47151310  T
Q  242 atttcaaaacaaattagtttagttctttttgtttcttgcaactttgcaagagttaagatgaaacatacttgaagatctagcaaaagaggaacatgggtct 341  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47151309 atttcaaaacaa---agtttagttctttttgtttcttgcaactttgcaagagttaagatgaaacatacttgaagatctagcaaaagaggaacatgggtct 47151213  T
Q  342 cttccattttagcagcaagagaaagacaagcaacagct 379  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47151212 cttccattttagcagcaagagaaagacaagcaacagct 47151175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 39337325 - 39337250
Alignment:
Q  303 aacatacttgaagatctagcaaaagaggaacatgggtctcttccattttagcagcaagagaaagacaagcaacagc 378  Q
    |||||||||||| ||| |  | ||| || |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  39337325 aacatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagc 39337250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 23703270 - 23703224
Alignment:
Q  332 acatgggtctcttccattttagcagcaagagaaagacaagcaacagc 378  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  23703270 acatgggtttcttccattttagcagcaagagacaaacaagcaacagc 23703224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 7107834 - 7107762
Alignment:
Q  304 acatacttgaagatctagcaaaagaggaacatgggtctcttccattttagcagcaagagaaagacaagcaaca 376  Q
    ||||||||||| ||| |  | ||| || |||||||| ||||||||||||||||||||||| | ||||||||||    
T  7107834 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaaca 7107762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 38157930 - 38157886
Alignment:
Q  332 acatgggtctcttccattttagcagcaagagaaagacaagcaaca 376  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||    
T  38157930 acatgggtttcttccattttagcagcaagagacaaacaagcaaca 38157886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 55018667 - 55018623
Alignment:
Q  332 acatgggtctcttccattttagcagcaagagaaagacaagcaaca 376  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||    
T  55018667 acatgggtttcttccattttagcagcaagagacaaacaagcaaca 55018623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 35785838 - 35785910
Alignment:
Q  304 acatacttgaagatctagcaaaagaggaacatgggtctcttccattttagcagcaagagaaagacaagcaaca 376  Q
    ||||||||||| ||| |  | ||| || |||||| | ||||||||||||||||||||||| | ||||||||||    
T  35785838 acatacttgaaaatccaaaagaagtggcacatggatttcttccattttagcagcaagagacaaacaagcaaca 35785910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 21143409 - 21143337
Alignment:
Q  304 acatacttgaagatctagcaaaagaggaacatgggtctcttccattttagcagcaagagaaagacaagcaaca 376  Q
    ||||||||||| ||| |  | ||| || ||||| || ||||||||||||||||||||||| | ||||||||||    
T  21143409 acatacttgaaaatccaaaagaagtggcacatgagtttcttccattttagcagcaagagacaaacaagcaaca 21143337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 52794464 - 52794508
Alignment:
Q  332 acatgggtctcttccattttagcagcaagagaaagacaagcaaca 376  Q
    |||||||| ||||||||||||||||||||||| | ||||| ||||    
T  52794464 acatgggtttcttccattttagcagcaagagacaaacaagaaaca 52794508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2764 times since January 2019
Visitors: 4012