View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0654_low_6 (Length: 354)
Name: NF0654_low_6
Description: NF0654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0654_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 13418779 - 13418888
Alignment:
| Q |
87 |
gcacttagcacatcatcccataactgcattttagtttcctgaatgcataatataactggtaatttctcccctaccaacaagcgaacatcccttcgtttct |
186 |
Q |
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| T |
13418779 |
gcacttagcaaatcatcacataactgcaatttagtttcctgaagacataaaataactggtaatttctcccctaccaacaagcgtacatcccttcgtttct |
13418878 |
T |
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| Q |
187 |
ctaaccctcc |
196 |
Q |
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|||||||||| |
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| T |
13418879 |
ctaaccctcc |
13418888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 13418893 - 13418968
Alignment:
| Q |
266 |
cacctactcaacctccccttgccgcctccttccctcacccacaccacgactttttaacttcttaactttgtccttc |
341 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13418893 |
cacctactcaacctccccttaccgcctccctccctcacccacaccacgactttttaacttcttaactttgtccttc |
13418968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 29971206 - 29971267
Alignment:
| Q |
189 |
aaccctcctaatcccctaacattccaagataaaatcttcatgacacacaccctctccccaac |
250 |
Q |
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||||| ||||| |||| |||||||||||||| |||| |||| ||||||||||| ||||||| |
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| T |
29971206 |
aacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccctccccccaac |
29971267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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