View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0655-Insertion-1 (Length: 896)

Name: NF0655-Insertion-1
Description: NF0655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0655-Insertion-1
NF0655-Insertion-1
[»] chr1 (8 HSPs)
chr1 (216-599)||(17592581-17592966)
chr1 (345-716)||(17583660-17584030)
chr1 (597-717)||(17591567-17591687)
chr1 (782-896)||(17591388-17591502)
chr1 (20-150)||(17593033-17593160)
chr1 (10-150)||(17584241-17584378)
chr1 (786-896)||(17583481-17583591)
chr1 (216-271)||(17584127-17584183)
[»] chr5 (27 HSPs)
chr5 (782-896)||(28474841-28474955)
chr5 (782-896)||(32762981-32763095)
chr5 (348-716)||(28475025-28475396)
chr5 (346-673)||(32763200-32763536)
chr5 (806-886)||(32651840-32651920)
chr5 (782-885)||(32858241-32858347)
chr5 (804-895)||(32740072-32740163)
chr5 (804-880)||(32656093-32656169)
chr5 (10-125)||(32763761-32763873)
chr5 (806-885)||(32767892-32767971)
chr5 (807-875)||(25469577-25469645)
chr5 (70-150)||(32744170-32744250)
chr5 (217-293)||(32763600-32763676)
chr5 (359-505)||(32557346-32557492)
chr5 (782-844)||(32710231-32710293)
chr5 (477-546)||(32655682-32655751)
chr5 (216-300)||(28475478-28475562)
chr5 (598-695)||(32858517-32858614)
chr5 (457-524)||(32752169-32752236)
chr5 (379-505)||(32651319-32651445)
chr5 (216-352)||(25470014-25470150)
chr5 (786-834)||(25477501-25477549)
chr5 (598-717)||(32557675-32557802)
chr5 (790-844)||(32557870-32557924)
chr5 (216-301)||(25477983-25478068)
chr5 (636-689)||(32655917-32655969)
chr5 (475-524)||(32858867-32858916)
[»] chr7 (8 HSPs)
chr7 (794-896)||(7969909-7970011)
chr7 (786-885)||(37577111-37577210)
chr7 (599-695)||(7969710-7969807)
chr7 (225-298)||(32895279-32895352)
chr7 (216-301)||(37577821-37577906)
chr7 (381-524)||(37577568-37577711)
chr7 (72-150)||(32895381-32895459)
chr7 (616-655)||(37577343-37577382)
[»] chr2 (4 HSPs)
chr2 (804-889)||(16756974-16757059)
chr2 (569-716)||(16752647-16752805)
chr2 (804-895)||(16752463-16752554)
chr2 (577-655)||(16757222-16757300)
[»] chr4 (2 HSPs)
chr4 (782-885)||(21524542-21524648)
chr4 (598-685)||(2166521-2166607)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 216 - 599
Target Start/End: Complemental strand, 17592966 - 17592581
Alignment:
Q  216 taagaaaagcaaaagtcgaagactctatgtt--atcaataatgcatgacttctgtacttatagtgcgattgtcttcatgataagggtcgtcaacgatggc 313  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  17592966 taagaaaagcaaaagtcgaagactctatgttttatcaataatgcatgacttctctacttatagtgcgattgtcttcatgataagggtcgtcgacgatggc 17592867  T
Q  314 ggacggtgaggttgattgttgcctgcgctcggatctagttcccaaggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaag 413  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17592866 ggacgatgaggttgattgttgcctgcgctcggatctagttcccaaggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaag 17592767  T
Q  414 ggtccggtcctcatctagtaccttaccgccgaagatcaaacgttgctggtgcacggggatattttccttgtcaagaatcttcttcttcacatcgattatt 513  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17592766 ggtccggtcctcatctagtaccttaccgccaaagatcaaacgttgctggtgcaccgggatattttccttgtcaagaatcttcttcttcacatcgattatt 17592667  T
Q  514 gtgtctgaactttcaacccttagagggtacctcctactagtctgggtcattatgtagatttgtatctgcaccacaattgccattaa 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17592666 gtgtctgaactttcaacccttagagggtacctcctactagtctgggtcattatgtagatttgtatctgcaccacaattgccattaa 17592581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 345 - 716
Target Start/End: Complemental strand, 17584030 - 17583660
Alignment:
Q  345 gatctagttcccaaggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccg 444  Q
    |||||||||||||| ||||||||||||||  || |||||||||||||||| ||||||||||||| ||||||||||||  || ||||||  ||||||| |     
T  17584030 gatctagttcccaatgaggcggaggcagagatgaatggttgacttctcttggatgttgtaatcggcaagggtccggttgtcctctagttgcttaccgtca 17583931  T
Q  445 aagatcaaacgttgctggtgcacggggatattttccttgtcaagaatcttcttcttcacatcgattattgtgtctgaactttcaacccttagagggtacc 544  Q
    ||||||| ||||||||||||||| |  |||| |||||||||||||||||||||||||||||  ||||| ||||||||||| || ||||| || |||||      
T  17583930 aagatcagacgttgctggtgcactgcaatatcttccttgtcaagaatcttcttcttcacattcattatcgtgtctgaactctccaccctcagggggtatg 17583831  T
Q  545 tcctactagtctgggtcattatgtagatttgtatctgcaccacaattgccattaaatcaataatagaaaatttgagattgatatttcaagaactgatcca 644  Q
    || | | |||||||||| ||||||||||||| |||||||| | |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  17583830 tctttccagtctgggtccttatgtagatttgcatctgcacaaaaattgccattaaatcaatga-agaaaacttgagattgatatttcaagaactgatcca 17583732  T
Q  645 aaaatagaaaacactaacagcctttgtttggcatttgaaaaactgaagaataagataaaatgctagagtata 716  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17583731 aaaatagaaaacactaacagccttcgtttggcatttgaaaaactgaagaataagataaaatgctagagtata 17583660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 597 - 717
Target Start/End: Complemental strand, 17591687 - 17591567
Alignment:
Q  597 taaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctttgtttggcatttgaaaaactgaagaata 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17591687 taaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctttgtttggcatttgaaaaactgaagaata 17591588  T
Q  697 agataaaatgctagagtatat 717  Q
    |||||||||||||||||||||    
T  17591587 agataaaatgctagagtatat 17591567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 782 - 896
Target Start/End: Complemental strand, 17591502 - 17591388
Alignment:
Q  782 ggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaa 881  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17591502 ggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaa 17591403  T
Q  882 gtaacttgttggacg 896  Q
    |||||||||||||||    
T  17591402 gtaacttgttggacg 17591388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 17593160 - 17593033
Alignment:
Q  20 actcttttcaattaaatcatactctaatgcagcaggagtcattgcatgtatctatgtgagaattactgtacaatttcaacttatgttgaaaagtaaatag 119  Q
    |||||||||||| |||||| |||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17593160 actcttttcaataaaatcagactcaaa---agcaggagtcattgcatgtatctatgtgagaattactgtacaatttcaacttatgttgaaaagtaaatag 17593064  T
Q  120 gtttcttcaatttttgaaaatcatccccagt 150  Q
    |||||||||||||||||||||||||||||||    
T  17593063 gtttcttcaatttttgaaaatcatccccagt 17593033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 17584378 - 17584241
Alignment:
Q  10 tacatcacttactcttttcaattaaatcatactctaatgcagcaggagtcattgcatgtatctatgtgagaattactgtacaatttcaacttatgttgaa 109  Q
    ||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |    
T  17584378 tacatcactaactcttttcaattaaatcagactctaatgcag---gagtcattgcatgcatctatgtgagaattactgtagaatttcaacttatgttgga 17584282  T
Q  110 aagtaaataggtttcttcaatttttgaaaatcatccccagt 150  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  17584281 aagtaaataggtttcttcaattgctgaaaatcatccccagt 17584241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 786 - 896
Target Start/End: Complemental strand, 17583591 - 17583481
Alignment:
Q  786 ataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaa 885  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17583591 ataggaggtaccctgggggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaa 17583492  T
Q  886 cttgttggacg 896  Q
    | |||||||||    
T  17583491 cctgttggacg 17583481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 17584183 - 17584127
Alignment:
Q  216 taagaaaagcaaaagtcgaagactct-atgttatcaataatgcatgacttctgtact 271  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||    
T  17584183 taagaaaagcaaaagtcaaagactcttatgttatcaataatgcatgagttctctact 17584127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 8e-39; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 782 - 896
Target Start/End: Complemental strand, 28474955 - 28474841
Alignment:
Q  782 ggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaa 881  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  28474955 ggagataggaggtaccatgggggttatacaaatatctagcttgagaggttcggaagaaccaaatggaatcacaagcaactctgatgaaggagttgctaaa 28474856  T
Q  882 gtaacttgttggacg 896  Q
    | ||| | |||||||    
T  28474855 gcaacctcttggacg 28474841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 782 - 896
Target Start/End: Complemental strand, 32763095 - 32762981
Alignment:
Q  782 ggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaa 881  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  32763095 ggagataggaggtaccatgggggttatgcaaatatctagcttgagaggttcggaagaagcaaatggaatcacaagaaactctgatgaaagagttgctaaa 32762996  T
Q  882 gtaacttgttggacg 896  Q
    | |||  ||||||||    
T  32762995 gcaacacgttggacg 32762981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 348 - 716
Target Start/End: Complemental strand, 28475396 - 28475025
Alignment:
Q  348 ctagttcccaaggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccgaag 447  Q
    |||| ||||| |||||||||||   | | |||||||||| ||||||| ||||||||||  | |||||||  | |  || ||||||  ||||||| ||  |    
T  28475396 ctagctcccatggaggcggaggacaaggaggatggttgagttctcttggatgttgtaactggcaagggtaagattgtcctctagttgcttaccgtcgttg 28475297  T
Q  448 atcaaacgttgctggtgcacggggatattttccttgtcaagaatcttcttcttcacatcgattattgtgtctgaactttcaacccttagagggtacctcc 547  Q
    || | |||||||| ||| |  |||||   |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| || ||     ||     
T  28475296 attagacgttgctcgtgtattgggatcccttccttgtcaagaatcttcttcttcacatcgactatcgtgtctgaactctcaaccctcaggggaattgtct 28475197  T
Q  548 tactagtctgggtcat-tatgtagatttgtatctgcaccacaattgccattaaatcaataatagaaaatttgagattgatatttcaagaactgatccaaa 646  Q
    | | | ||  | || |  | ||||||||| ||||||||||||| | ||||||||||| ||| ||||||||||||| ||| |||||||||||| |||||||    
T  28475196 ttccaatc-agatcttccacgtagatttgcatctgcaccacaaataccattaaatcagtaaaagaaaatttgagactgacatttcaagaactaatccaaa 28475098  T
Q  647 aatagaaaacactaacagcctttg-tttggcatttgaaaaactgaagaa--taagataaaatgctagagtata 716  Q
    ||||||||||||||||| |||| | |||||||||| ||||||||| |||  | ||||||||||||| ||||||    
T  28475097 aatagaaaacactaacaaccttagttttggcatttcaaaaactgatgaatttgagataaaatgctatagtata 28475025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 346 - 673
Target Start/End: Complemental strand, 32763536 - 32763200
Alignment:
Q  346 atctagttcccaaggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccg- 444  Q
    |||||| ||||| ||||||||| |  || |||||||||||| ||||||| ||||||||||| | |||||||  |||  || ||||    ||||||| ||     
T  32763536 atctagctcccatggaggcggatgaggaggtggatggttgaattctcttggatgttgtaattggcaagggtaaggttgtcctctaactgcttaccgtcgt 32763437  T
Q  445 --aagatcaaacgttgctggtgcacggggatattttccttgtcaagaatcttcttcttcacatcgattattgtgtctgaactttcaacccttagagggta 542  Q
      | ||||| |||||||| |||||  |||||   |||||||||||||||||| ||||||||||    ||||||||||||||| |||||||| |  |||      
T  32763436 cgatgatcagacgttgctcgtgcattgggatcccttccttgtcaagaatctttttcttcacattttctattgtgtctgaactctcaaccctcaaggggat 32763337  T
Q  543 cctcctactagtctgggtcattatgtagatttgtatctgcaccacaattgccattaaatcaataatagaaaatttgagattgatat------ttcaagaa 636  Q
    | || | | |||| ||    ||| ||||||||| ||||||||||||| | |||||||||||||||  |||||||||||| | ||||      ||||||||    
T  32763336 catctttccagtcaggtcttttacgtagatttgcatctgcaccacaaataccattaaatcaataaaggaaaatttgagactcatatatatatttcaagaa 32763237  T
Q  637 ctgatccaaaaatagaaaacactaacagcctttgttt 673  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  32763236 ctgatccaaaaatagaaaacactaacaaccttagttt 32763200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 806 - 886
Target Start/End: Original strand, 32651840 - 32651920
Alignment:
Q  806 tatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaac 886  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||    
T  32651840 tatgcaaatttctagcttcagaggttcagaagaaccaaatggaatcacaaggaactctgatgaaagatttgctgaagtaac 32651920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 782 - 885
Target Start/End: Complemental strand, 32858347 - 32858241
Alignment:
Q  782 ggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggt---tcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgct 878  Q
    |||||||||||||||| || ||| ||||||||||||||||||  |||||   ||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  32858347 ggagataggaggtaccatgggggctatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggcactctgatgaaagagttgct 32858248  T
Q  879 aaagtaa 885  Q
    |||||||    
T  32858247 aaagtaa 32858241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 804 - 895
Target Start/End: Complemental strand, 32740163 - 32740072
Alignment:
Q  804 gttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttgttggac 895  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||  ||||||||    
T  32740163 gttatgcaaatttctaacttgagaggttcagaagaactaaatggaatcacaaggaactttgatgaaagatttgctaaagtaatctgttggac 32740072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 804 - 880
Target Start/End: Original strand, 32656093 - 32656169
Alignment:
Q  804 gttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaa 880  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| || ||||||||||||||    
T  32656093 gttatgcaaatttctagcttgagagcttcaaaagaaccaaatggaatcacaagcaactccgacgaaagagttgctaa 32656169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 32763873 - 32763761
Alignment:
Q  10 tacatcacttactcttttcaattaaatcatactctaatgcagcaggagtcattgcatgtatctatgtgagaattactgtacaatttcaacttatgttgaa 109  Q
    ||||||||| ||||||||||||||||||| |||||  ||| |   |||||| | |||| |||||||| | |||||||||| ||||||||||||||||||     
T  32763873 tacatcactgactcttttcaattaaatcaaactctcctgccg---gagtcactacatggatctatgtaaaaattactgtaaaatttcaacttatgttgag 32763777  T
Q  110 aagtaaataggtttct 125  Q
    ||||||||||||||||    
T  32763776 aagtaaataggtttct 32763761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 806 - 885
Target Start/End: Complemental strand, 32767971 - 32767892
Alignment:
Q  806 tatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaa 885  Q
    ||||||||| ||||||||||| ||||||||||| |||| |||||||||||| | |||||||| |||||||||||||||||    
T  32767971 tatgcaaatttctagcttgagtggttcagaagagccaactggaatcacaaggagctctgatggaagagttgctaaagtaa 32767892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 807 - 875
Target Start/End: Complemental strand, 25469645 - 25469577
Alignment:
Q  807 atgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagtt 875  Q
    |||||||| |||| || ||||||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  25469645 atgcaaatttctatctcgagaggttcagaaaaaccaaatggaatcacaaggaactttgatgaaagagtt 25469577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 32744250 - 32744170
Alignment:
Q  70 tctatgtgagaattactgtacaatttcaacttatgttgaaaagtaaataggtttcttcaatttttgaaaatcatccccagt 150  Q
    |||||||||||||||||| ||||||||  ||  |||||||||||||||| ||||||||||||  |||||||||||| ||||    
T  32744250 tctatgtgagaattactgaacaatttccgctattgttgaaaagtaaatatgtttcttcaattgctgaaaatcatccgcagt 32744170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 32763676 - 32763600
Alignment:
Q  217 aagaaaagcaaaagtcgaagactctatgttatcaataatgcatgacttctgtacttatagtgcgattgtcttcatga 293  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| || | | |||| |||||||||    
T  32763676 aagaaaagcaaaagtcaaagactctatgttatcaataatgtatgacttctctactaattgggtgattatcttcatga 32763600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 359 - 505
Target Start/End: Original strand, 32557346 - 32557492
Alignment:
Q  359 ggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccgaagatcaaacgttg 458  Q
    |||||||||||  || ||||| ||||| |||||||| ||||||||||| | |||||||  ||   |||||||||| ||||  | | || |||| ||||||    
T  32557346 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 32557445  T
Q  459 ctggtgcacggggatattttccttgtcaagaatcttcttcttcacat 505  Q
     |||||||| |||||  ||||||||||||||||||| | ||||||||    
T  32557446 ttggtgcactgggatcgtttccttgtcaagaatcttatccttcacat 32557492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 782 - 844
Target Start/End: Complemental strand, 32710293 - 32710231
Alignment:
Q  782 ggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaa 844  Q
    |||||||||||||||| || ||||||||||||| ||||||| |||| ||||||||||||||||    
T  32710293 ggagataggaggtaccttgggggttatgcaaatttctagctcgagaagttcagaagaaccaaa 32710231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 546
Target Start/End: Original strand, 32655682 - 32655751
Alignment:
Q  477 ttccttgtcaagaatcttcttcttcacatcgattattgtgtctgaactttcaacccttagagggtacctc 546  Q
    |||||||||  ||||||||||||||||||||| ||||||||||||||| | |||| |||||||| |||||    
T  32655682 ttccttgtcctgaatcttcttcttcacatcgagtattgtgtctgaactcttaaccattagagggaacctc 32655751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 28475562 - 28475478
Alignment:
Q  216 taagaaaagcaaaagtcgaagactctatgttatcaa-taatgcatgacttctgtacttatagtg-cgattgtcttcatgataagggt 300  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||| ||||| |  ||||||||||| |||||||||    
T  28475562 taagaaaagcaaaagtc--agactctatgttatcaaataatgcatgacttctctacatatagggtggattgtcttcacgataagggt 28475478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 598 - 695
Target Start/End: Complemental strand, 32858614 - 32858517
Alignment:
Q  598 aaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctttgtttggcatttgaaaaactgaagaat 695  Q
    |||||||||  |||||| ||||||  |||| ||||| |||||||||||||| || |  |||||||| ||||| |||||||||||||||| ||| ||||    
T  32858614 aaatcaatataagaaaaattgagaccgatacttcaaaaactgatccaaaaagagcattcactaacaacctttttttggcatttgaaaaattgacgaat 32858517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 457 - 524
Target Start/End: Complemental strand, 32752236 - 32752169
Alignment:
Q  457 tgctggtgcacggggatattttccttgtcaagaatcttcttcttcacatcgattattgtgtctgaact 524  Q
    ||||||||||| |||||   |||||||||| |||| |||||||||||||||| ||| |||||||||||    
T  32752236 tgctggtgcactgggatcccttccttgtcatgaattttcttcttcacatcgagtatcgtgtctgaact 32752169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 505
Target Start/End: Original strand, 32651319 - 32651445
Alignment:
Q  379 atggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccgaagatcaaacgttgctggtgcacggggatatttt 478  Q
    ||||||||||| |||| |||| |||||||| ||||| ||||| | || ||||||   |||||  | |||||||||||||| | || ||| ||| | ||||    
T  32651319 atggttgacttatcttggatgatgtaatcggcaaggatccggccgtcctctagttgtttaccagcaaagatcaaacgttggtcgtacactggggtctttt 32651418  T
Q  479 ccttgtcaagaatcttcttcttcacat 505  Q
    ||| ||||| |||||||| ||||||||    
T  32651419 cctcgtcaacaatcttctccttcacat 32651445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 25470150 - 25470014
Alignment:
Q  216 taagaaaagcaaaagtcgaagactctatgttatcaataatgcatgacttctgtacttatagtgcgattgtcttcatgataagggtcgtcaacgatggcgg 315  Q
    |||||||||||||||||  || || |||||||||||||||  || | || | ||||||||| | ||||||||||||||||  ||||| | | |   ||||    
T  25470150 taagaaaagcaaaagtcataggctatatgttatcaataatatattaattttctacttatagggtgattgtcttcatgatacaggtcgccgatggcagcgg 25470051  T
Q  316 acggtgaggttgattgttgcctgcgctcggatctagt 352  Q
    | | |||||||||| ||||||||| || |||| ||||    
T  25470050 atgatgaggttgatggttgcctgctcttggatgtagt 25470014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 834
Target Start/End: Complemental strand, 25477549 - 25477501
Alignment:
Q  786 ataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcag 834  Q
    |||||||||||| || ||||||||||||| |||| ||||||||||||||    
T  25477549 ataggaggtaccatgggggttatgcaaatttctatcttgagaggttcag 25477501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 717
Target Start/End: Original strand, 32557675 - 32557802
Alignment:
Q  598 aaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaata-------gaaaacactaacagcctttgtttggcatttgaaaaactga 690  Q
    |||| ||||| ||||||||| |  |||||||||| ||||||||||||||| |        |||||||||||||  | || ||||||||||||||||||||    
T  32557675 aaatgaataaaagaaaatttaattttgatatttccagaactgatccaaaattgaaaaacggaaaacactaacaatcctt-tttggcatttgaaaaactga 32557773  T
Q  691 agaa--taagataaaatgctagagtatat 717  Q
     |||  | |||||||||||||||||||||    
T  32557774 tgaatttgagataaaatgctagagtatat 32557802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 844
Target Start/End: Original strand, 32557870 - 32557924
Alignment:
Q  790 gaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaa 844  Q
    |||||||| || ||||||||||||| ||||||| ||| |||| ||||||||||||    
T  32557870 gaggtaccttgggggttatgcaaatttctagctcgagtggtttagaagaaccaaa 32557924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 25478068 - 25477983
Alignment:
Q  216 taagaaaagcaaaagtcgaagactctatgttatcaataatgcatgacttctgtacttatagtgcgattgtcttcatgataagggtc 301  Q
    ||||||| |||||||||  ||||| |||||||||||||||  |||| || | ||||||||  | ||||||||| |||||| |||||    
T  25478068 taagaaatgcaaaagtcatagactatatgttatcaataatatatgatttttctacttatatggtgattgtcttaatgatacgggtc 25477983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 689
Target Start/End: Original strand, 32655917 - 32655969
Alignment:
Q  636 actgatccaaaaatagaaaacactaacagcctttgtttggcatttgaaaaactg 689  Q
    |||||| ||||||||||||||||||||| ||| | ||| |||||||||||||||    
T  32655917 actgatacaaaaatagaaaacactaacaacctat-tttcgcatttgaaaaactg 32655969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 32858916 - 32858867
Alignment:
Q  475 ttttccttgtcaagaatcttcttcttcacatcgattattgtgtctgaact 524  Q
    |||||||||||||||||| ||| |||||||| || ||| |||||||||||    
T  32858916 ttttccttgtcaagaatcatctccttcacattgactatcgtgtctgaact 32858867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 794 - 896
Target Start/End: Original strand, 7969909 - 7970011
Alignment:
Q  794 taccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttgttgg 893  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||||    
T  7969909 taccgtgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttgg 7970008  T
Q  894 acg 896  Q
    |||    
T  7970009 acg 7970011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 786 - 885
Target Start/End: Complemental strand, 37577210 - 37577111
Alignment:
Q  786 ataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaa 885  Q
    |||||||||||| || ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  37577210 ataggaggtaccatgggggatatgcaaatttctagctcgagaggttcagaagaaccaaatggaatcacaaggaactctaatgaaagagttgataaagtaa 37577111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 599 - 695
Target Start/End: Original strand, 7969710 - 7969807
Alignment:
Q  599 aatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaa-tagaaaacactaacagcctttgtttggcatttgaaaaactgaagaat 695  Q
    ||||||||| ||||| |||||||   ||||||||||||||||| |||||| |||| ||||||| || ||||| ||||||||||| |||||||| ||||    
T  7969710 aatcaataaaagaaattttgagacaaatatttcaagaactgatacaaaaaatagagaacactagcaacctttttttggcatttgcaaaactgatgaat 7969807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 32895352 - 32895279
Alignment:
Q  225 caaaagtcgaagactctatgttatcaataatgcatgacttctgtacttatagtgcgattgtcttcatgataagg 298  Q
    |||||||| ||||||||||| ||||||||||| ||||||| | |||||||||   |||||||||||||||||||    
T  32895352 caaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatgataagg 32895279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 37577906 - 37577821
Alignment:
Q  216 taagaaaagcaaaagtcgaagactctatgttatcaataatgcatgacttctgtacttatagtgcgattgtcttcatgataagggtc 301  Q
    ||||||| ||||||||| ||||| | ||||||||||||||| |||||||||  |||||||  | |||||||||||||| |||||||    
T  37577906 taagaaatgcaaaagtcaaagacccaatgttatcaataatgtatgacttctcaacttatatggtgattgtcttcatgacaagggtc 37577821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 381 - 524
Target Start/End: Complemental strand, 37577711 - 37577568
Alignment:
Q  381 ggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccgaagatcaaacgttgctggtgcacggggatattttcc 480  Q
    |||||||||||||| ||||| ||||| | |||||||| ||   | ||||||| |||||||| | ||||||| |||||||   ||||  |||||   |||     
T  37577711 ggttgacttctcttggatgtggtaattggcaagggtcaggctattatctagttccttaccggcaaagatcagacgttgcatatgcattgggatcccttca 37577612  T
Q  481 ttgtcaagaatcttcttcttcacatcgattattgtgtctgaact 524  Q
    |||||||||||||||| ||||||||||  ||| |||||||||||    
T  37577611 ttgtcaagaatcttctccttcacatcggctatcgtgtctgaact 37577568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 32895459 - 32895381
Alignment:
Q  72 tatgtgagaattactgtacaatttcaacttatgttgaaaagtaaataggtttcttcaatttttgaaaatcatccccagt 150  Q
    ||||||||||||| | ||| |||||| ||  ||||| ||| |||||| ||||||||||||  |||||||||||||||||    
T  32895459 tatgtgagaattattatacgatttcagctagtgttggaaaataaatatgtttcttcaattgctgaaaatcatccccagt 32895381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 655
Target Start/End: Complemental strand, 37577382 - 37577343
Alignment:
Q  616 ttgagattgatatttcaagaactgatccaaaaatagaaaa 655  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  37577382 ttgagactgatatttcaagaactaatccaaaaatagaaaa 37577343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 804 - 889
Target Start/End: Complemental strand, 16757059 - 16756974
Alignment:
Q  804 gttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttg 889  Q
    |||||||||||  | |||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  16757059 gttatgcaaattacaagctcgagaggttcagaagaaccaattggaatcacaaggaactctgatgaaagagttgctaaagtaacttg 16756974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 569 - 716
Target Start/End: Complemental strand, 16752805 - 16752647
Alignment:
Q  569 agatttgtatctgcaccacaattgccattaaatcaataatagaaaatttgagattgatatttcaagaactgatc--------caaaaatagaaaacacta 660  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||| ||         |||||||||||||||||    
T  16752805 agatttgcatctgcaccacaattgacattaaatcaataaaagaaaatttgagactgatatttcaagagctggtctaaaattagaaaaatagaaaacacta 16752706  T
Q  661 acagcctttg-tttggcatttgaaaaactgaagaa--taagataaaatgctagagtata 716  Q
    ||| |||| | |||||||| |||||||| ||||||  | ||||||| ||||||||||||    
T  16752705 acaaccttagttttggcatgtgaaaaaccgaagaatttgagataaattgctagagtata 16752647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 804 - 895
Target Start/End: Complemental strand, 16752554 - 16752463
Alignment:
Q  804 gttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttgttggac 895  Q
    ||||||||||| ||||||||||||||||  |||||||||  |||||||| ||| ||||||| |||||||||| |||||||||| ||||||||    
T  16752554 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggac 16752463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 577 - 655
Target Start/End: Complemental strand, 16757300 - 16757222
Alignment:
Q  577 atctgcaccacaattgccattaaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaa 655  Q
    |||||||||||| ||| |||||||||||||| |||||| |||||| ||||||||||||||||| ||||||| |||||||    
T  16757300 atctgcaccacagttgacattaaatcaataaaagaaaaattgagactgatatttcaagaactggtccaaaattagaaaa 16757222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 782 - 885
Target Start/End: Complemental strand, 21524648 - 21524542
Alignment:
Q  782 ggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggt---tcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgct 878  Q
    |||||||||||||||| || ||||||||||||||||||||||  |||||   ||| ||||||||||||||||||||||  ||||| |||||||||||  |    
T  21524648 ggagataggaggtaccatgggggttatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggcactctcatgaaagagttaat 21524549  T
Q  879 aaagtaa 885  Q
    |||||||    
T  21524548 aaagtaa 21524542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 598 - 685
Target Start/End: Original strand, 2166521 - 2166607
Alignment:
Q  598 aaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctttgtttggcatttgaaaa 685  Q
    |||||||||  ||||||||||||| |||||| ||||  ||||| |||||||||||||||| |||||  |||| |||||||||| ||||    
T  2166521 aaatcaatacaagaaaatttgagactgatatatcaatgactgagccaaaaatagaaaacaataaca-actttttttggcatttcaaaa 2166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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