View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0655-Insertion-2 (Length: 876)
Name: NF0655-Insertion-2
Description: NF0655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0655-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 12163523 - 12163884
Alignment:
| Q |
8 |
gatgcaagtatagtcaggagaagtggtattgaatcattaaattttaaagtcttcctgacagtgtagtcaagagatgtgtttcattcgtaccaatgacaat |
107 |
Q |
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| T |
12163523 |
gatgcaagtatagtcaggagaagtggtattgaatcattaaattttaaagtcttcctgacagtgtagtcaagagatgtgtttcgttcgtaccaatgacaat |
12163622 |
T |
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| Q |
108 |
gcaaatgtggaatataggagactcacatttgagagaaagattattaagttaaaatgtgagtaactagtcatccatcaactatgaataaacaaaatgtttg |
207 |
Q |
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| T |
12163623 |
gcaaatatggaatataggagactcacatttgagagaaagattattaagttaaattatgagtaactagtcttccatcaactatgaataaacaaaatgtttg |
12163722 |
T |
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| Q |
208 |
atatataaaatagatagcccatattctccaattccttaaggttttgggttgatatgtatagagaatatgtgctaggttttgatgacatattacattatta |
307 |
Q |
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| T |
12163723 |
atatataaaatagatagcccgtattctccaattccttaaggttttgggttgatatgtatagagaatatgtgctaggttttgatgacatattacattatta |
12163822 |
T |
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| Q |
308 |
atgaattctgcattatcatcactattttacagcctctgatcatgttctcaattaacctagat |
369 |
Q |
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| T |
12163823 |
atgaattctgcattatcatcactattttacagcctctgatcatgttctcaattaacctagat |
12163884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 445 - 620
Target Start/End: Original strand, 12163967 - 12164142
Alignment:
| Q |
445 |
acactgatcatggattctactacaattataaagaaacatgcacaaatagttgagcatgcacatgctaaatgattaaatgccaaccttgttttgctggatt |
544 |
Q |
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| T |
12163967 |
acactgatcatggattctactacaattataaagaaacatgcacaaatagttgagcatgcacatgctaaatgattaaatgccaacctcgttttgctggatt |
12164066 |
T |
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| Q |
545 |
ttattatctaaacacaaactaccgataccatatatactactaagtactaacagtcaaaatcattttctttgtgatg |
620 |
Q |
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| T |
12164067 |
ttattatctaaacacaaactaccgataccatatatactactaagtactaacagtcaaaatcattttctttgtgatg |
12164142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 694 - 876
Target Start/End: Original strand, 12164215 - 12164397
Alignment:
| Q |
694 |
gaacacaaacaagtcggtggataataatagtaataagaaaacagaaagctgaggaatcaaagcatgcattccacctctcatatgtcacacatccctagat |
793 |
Q |
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| T |
12164215 |
gaacacaaacaagtcggtggataataatagtaataagaaaacagaaagctgaggaaccaaagcatgcatttcacctctcatatgtcacacatccctagat |
12164314 |
T |
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| Q |
794 |
tagaggtgactgatatgaaaagtcaagctttatattataaataaaattaccctaaatatattcttttgtcttctttcacaaat |
876 |
Q |
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| T |
12164315 |
tagaggtgactgatatgaaaagtcaagctttatattataaataaaattaccctaaatatattcttttgtcttctttcataaat |
12164397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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