View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0655-Insertion-6 (Length: 490)
Name: NF0655-Insertion-6
Description: NF0655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0655-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 53608778 - 53609154
Alignment:
| Q |
8 |
attatcaagatgtaaattgtccaatctctatccattagcttagttgaactaactagttaactctaaatatggttttgccaatcaatcaggttatttaaga |
107 |
Q |
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| T |
53608778 |
attatcaagatgtaaattgtccaatctctatccattagcttagttgaactaactagttaactctaaatatggttttgccaatcaatcaggctatttaaga |
53608877 |
T |
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| Q |
108 |
gtcatgaactcatgattttaaataaagaataaatgaatataagcatatggataagttgaaaatggaaaagtattatctagaacacagaagaattaggata |
207 |
Q |
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| T |
53608878 |
gtcatgaactcatgattttaaataaagaataaatgaatataagcatatggataagttgaaaatggaaaagtattatctagaacacagaagaattaggata |
53608977 |
T |
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| Q |
208 |
aaataaatctatgaaatagatgatataatggtttctatggtggaggtagattttgtggtctgtattgtcgagtttgattgaaaatggt---atcagtgtc |
304 |
Q |
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| T |
53608978 |
aaataaatctatgaaatagatgatataatggtttctatggtggaggtagattttgtggtctgtattgtcgagtttgattgaaaatggtatgatcagtgtc |
53609077 |
T |
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| Q |
305 |
aaaaccactacctatagtgcttgtgcttgttaaggaaattaaggcagcaactagtcctgcattcccagctaaggttg |
381 |
Q |
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| T |
53609078 |
aaaaccactacctatagtgcttgtgcttgttaaggaaattaaggcagcaactagtcctgcattcccagctaaggttg |
53609154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 388 - 490
Target Start/End: Original strand, 53610356 - 53610459
Alignment:
| Q |
388 |
tgagttataatataaggttcaatgtaa-ggttatccactactgtagggtgcccttttactagagtctcttgcaaatgcaaagacagtttcagctcccttg |
486 |
Q |
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| T |
53610356 |
tgagttattatattaggttcaatgtaaaggttgtccactactgtagggtgcccttttactagagtctcttgcaaatgcaaagacagtttcagctcccttg |
53610455 |
T |
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| Q |
487 |
acaa |
490 |
Q |
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|||| |
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| T |
53610456 |
acaa |
53610459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 37210446 - 37210502
Alignment:
| Q |
325 |
ttgtgcttgttaaggaaattaaggcagcaactagtcctgcattcccagctaaggttg |
381 |
Q |
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| T |
37210446 |
ttgtgcttgttaaggaaattaaggcagctactagtcctgcatttccagctaaagttg |
37210502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 488
Target Start/End: Original strand, 37211780 - 37211865
Alignment:
| Q |
403 |
ggttcaatgtaaggttatccactactgtagggtgcccttttactagagtctcttgcaaatgcaaagacagtttcagctcccttgac |
488 |
Q |
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| T |
37211780 |
ggttcaatgtaaggctttccgcgactgtatgttgatcttttaccaaagtctcttgcaaatgcaaaggcagtttcagctcccttgac |
37211865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 37223129 - 37223183
Alignment:
| Q |
28 |
ccaatctctatccattagcttagttgaactaactagttaactctaaatatggttt |
82 |
Q |
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| T |
37223129 |
ccaatctctatccattaggttagatgaactaaccagttaactctaaaaatggttt |
37223183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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