View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0655-Insertion-8 (Length: 471)
Name: NF0655-Insertion-8
Description: NF0655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0655-Insertion-8 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 5e-94; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 281 - 471
Target Start/End: Complemental strand, 33050789 - 33050599
Alignment:
| Q |
281 |
cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggcctcatttagaagatttgattagtctacat |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
33050789 |
cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggccttattgagaagattagattagtctacat |
33050690 |
T |
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| Q |
381 |
gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggccaaaatatacaaacttcaaccaaatcaaaacagtaaaaaac |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33050689 |
gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggccaaaatatacaaacttcaatcaaatcaaaacagtaaaaaac |
33050599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 33032291 - 33032166
Alignment:
| Q |
15 |
cattgcctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttcttgggtggccactgcgaatgttttgagaaac |
114 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |
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| T |
33032291 |
cattgtctcagacatccaaggaaggataaaa-cagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaac |
33032193 |
T |
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| Q |
115 |
aagccttcgaaatatcatcatagacaa |
141 |
Q |
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|||||||| | |||||||||||||||| |
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| T |
33032192 |
aagccttcaagatatcatcatagacaa |
33032166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 434
Target Start/End: Complemental strand, 33032074 - 33031985
Alignment:
| Q |
345 |
atttggcctcatttagaagatttgattagtctacatgttaaacttcagacatatgcttgtcttttttaaatattttaatcattggccaaa |
434 |
Q |
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| T |
33032074 |
atttggcctcattgagaagattagattagtctacatgttaaacttcagacatatgcttgtctattataaatatttaaatcattggccaaa |
33031985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 33032558 - 33032457
Alignment:
| Q |
20 |
cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacg-cgaaagttcttgggtggccactgcgaatgttttgagaaacaagc |
118 |
Q |
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||||||||||||||||||||||| | |||||| |||||||||||| |||||| | |||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
33032558 |
cctcagacatccaaggaaggatacag-cagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagc |
33032460 |
T |
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| Q |
119 |
ctt |
121 |
Q |
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||| |
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| T |
33032459 |
ctt |
33032457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 33050895 - 33050800
Alignment:
| Q |
20 |
cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacg-cgaaagttcttgggtggccactgcgaatgttttgagaaaca |
115 |
Q |
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|||||| |||||||||||||||| | |||||| ||||||||||| |||||| | |||||| |||| || |||||||||||||||||||||||||| |
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| T |
33050895 |
cctcaggcatccaaggaaggatagag-cagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaaca |
33050800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 38903621 - 38903494
Alignment:
| Q |
15 |
cattgcctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttcttgggtggccactgcgaatgttttgagaaac |
114 |
Q |
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||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||| |
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| T |
38903621 |
cattgtctcagacatccaaggaaggataaaa-cagcactagctctcaagcctggcgaaggcgaaagctcttaggcggccactgcgaatgttttgagaaac |
38903523 |
T |
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| Q |
115 |
aagccttcgaaatatcatcatagacaata |
143 |
Q |
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| T |
38903522 |
aagccttcaagatatcatcatagacaata |
38903494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 38903975 - 38903860
Alignment:
| Q |
20 |
cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacg-cgaaagttcttgggtggccactgcgaatgttttgagaaacaagc |
118 |
Q |
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||||||||||||||||||||| || | |||||| |||||||||||| |||||| | ||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
38903975 |
cctcagacatccaaggaagga-aatagcagcattaactctcaagcccggcgaaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagc |
38903877 |
T |
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| Q |
119 |
cttcgaaatatcatcat |
135 |
Q |
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||| || ||||||||| |
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| T |
38903876 |
cttagatttatcatcat |
38903860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 38904311 - 38904196
Alignment:
| Q |
20 |
cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttcttgggtggccactgcgaatgttttgagaaacaagcc |
119 |
Q |
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||||||||||||||||||||| | ||| |||| | ||||||||||||||||| ||||||| | || || ||||||||||||||||||||||||||||| |
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| T |
38904311 |
cctcagacatccaaggaaggaaagtaactgcattagctctcaagcctggcgaaggcgaaagctattaggcagccactgcgaatgttttgagaaacaagcc |
38904212 |
T |
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| Q |
120 |
ttcgaaatatcatcat |
135 |
Q |
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|| || ||||||||| |
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| T |
38904211 |
ttagatttatcatcat |
38904196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 43522107 - 43522008
Alignment:
| Q |
21 |
ctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttcttgggtggccactgcgaatgttttgagaaacaagcct |
120 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
43522107 |
ctcagacatccaaggaaggataaag-cagcattaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct |
43522009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 53017377 - 53017497
Alignment:
| Q |
21 |
ctcagacatccaaggaaggataaaa--acagcataaactctcaagcctggcgaacgcgaaagttcttgggtggccactgcgaatgttttgagaaacaagc |
118 |
Q |
| |
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|||||||||||||||||||| |||| ||||||| | ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
53017377 |
ctcagacatccaaggaaggaaaaaaaaacagcattagctctcaagcctggcgaaggcgaaagctcttggtcggccactgcgaatgttttgagaaacaagc |
53017476 |
T |
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| Q |
119 |
cttcgaaatatcatcatagac |
139 |
Q |
| |
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||| |||||||||| |||| |
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| T |
53017477 |
cttaataatatcatcacagac |
53017497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 53017180 - 53017293
Alignment:
| Q |
21 |
ctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttcttgggtggccactgcgaatgttttgagaaacaagcct |
120 |
Q |
| |
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|||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||| |
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| T |
53017180 |
ctcagacatccaaggaaggataaag-cagcactagctctcaagcctggcgaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct |
53017278 |
T |
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| Q |
121 |
tcgaaatatcatcat |
135 |
Q |
| |
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| | | ||||||||| |
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| T |
53017279 |
ttggattatcatcat |
53017293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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