View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0655-Insertion-9 (Length: 436)
Name: NF0655-Insertion-9
Description: NF0655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0655-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 436
Target Start/End: Complemental strand, 44063699 - 44063277
Alignment:
| Q |
7 |
actccattcgtttaatatttttctcgttgtcgttttaagattatttaatttacacatacacacagctaggtaaagattaattaagcgacataattaactt |
106 |
Q |
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| T |
44063699 |
actccattcgtttaatatttttc--gttgtcgttttaagattattta-----cacatacacacagctaggtaaatattaattaagcgacataattaactt |
44063607 |
T |
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| Q |
107 |
aactatacatatgtccaatgcatgaatattcgatgaataaattacttcatgtttaaactcttatttaacatatatatacagataaggcattgtgcggtgg |
206 |
Q |
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| T |
44063606 |
aactatacatatgtccaatgcatgaatattcgatgaataaattacttcatgtttaaactcttatttaacatatatatacagataaggcattgtgcggtgg |
44063507 |
T |
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| Q |
207 |
aaatgatgaatactatttcttcgccaaagtgaagggaaataaatccagtactgagaatgggcattgggaggaaattggtgtgacagtaccaatattttca |
306 |
Q |
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| T |
44063506 |
aaatgatgaatactatttcttcgccaaagtgaaggaaaataaatccagtactgagaatgggcattgggaggaaattggtgtgacagtaccaatattttca |
44063407 |
T |
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| Q |
307 |
ggcactgaccagaaagtgggaatgaagaagtacctattattccacattggcgaattagcacaaagttcggaaacaagttgggtaatgcaagaatatcata |
406 |
Q |
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| T |
44063406 |
ggcactgaccagaaagtgggaatgaagaagtacctattattccacattggcgaattagcacaaagttttgaaacaagttgggtaatgcaagaatatcata |
44063307 |
T |
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| Q |
407 |
tttgctccactggatttgatcaaagtactg |
436 |
Q |
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| T |
44063306 |
tttgctccactggatttgatcaaagtactg |
44063277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 409
Target Start/End: Complemental strand, 39241745 - 39241712
Alignment:
| Q |
376 |
gaaacaagttgggtaatgcaagaatatcatattt |
409 |
Q |
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| T |
39241745 |
gaaacaagttgggtaatggaagaatatcatattt |
39241712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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