View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0655_low_1 (Length: 361)
Name: NF0655_low_1
Description: NF0655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0655_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 32766681 - 32767011
Alignment:
| Q |
1 |
cagtacttgctgttctgcaaaccaaatgcaccctaaaaagcataatgtagttatgtcatttcaatacaaatgatatgctgttataataaaacataagcca |
100 |
Q |
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| T |
32766681 |
cagtacttgctgttctacaaaccaaatacaccctaaaaagcataatgtagttatgtcatttcaatataaatgatatgttgttataataaaacagaagcaa |
32766780 |
T |
|
| Q |
101 |
tctagtacgaatcgtttgagagaatccaaattcaatttttgataggaacaatttttaaccaaattttacttacctctcatgcaaatttcagattactagt |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | |
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| T |
32766781 |
tctagtacgaatcgtttgagagaatccaaattcgatttttgataggaacaattttttaccaaactttacttacctctcatgcaaatttcgaattactgat |
32766880 |
T |
|
| Q |
201 |
gcctattttttctaggaaccggagggttnnnnnnncataagcaatcttgacaaattgtcacta-nnnnnnnnatcataggtcaattttcaattttgtggg |
299 |
Q |
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||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |
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| T |
32766881 |
gcctatttttttgaggaatcggagagttaaaaaaacataagcaatcttgacaaattgtcaatatttttttttatcataggtcaattttcaa-tttgtggg |
32766979 |
T |
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| Q |
300 |
taggttaaaaagttataaacaaattcttttaa |
331 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
32766980 |
taggttaaaaagttataaacatattcttttaa |
32767011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 50386638 - 50386670
Alignment:
| Q |
3 |
gtacttgctgttctgcaaaccaaatgcacccta |
35 |
Q |
| |
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|
| T |
50386638 |
gtacttgctgttttgcaaaccaaatgcacccta |
50386670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 2615673 - 2615701
Alignment:
| Q |
147 |
aacaatttttaaccaaattttacttacct |
175 |
Q |
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| T |
2615673 |
aacaatttttaaccaaattttacttacct |
2615701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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