View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0656-Insertion-1 (Length: 763)
Name: NF0656-Insertion-1
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0656-Insertion-1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 533 - 763
Target Start/End: Original strand, 17744301 - 17744538
Alignment:
| Q |
533 |
attttatctctcaactatttcttctacacattattctgaaaacatagtagctaaaattcataaacaactgcattacaccaagtcaattttcaaggtacac |
632 |
Q |
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| T |
17744301 |
attttatctctcatctatttcttctacacattattctgaaaacatagtagctaaaattcataaacaactgcattacaccaagtaaattttcaaggtacac |
17744400 |
T |
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| Q |
633 |
ataattgatcaaattccaactacaaagaaagatacacttgtattaattaaaaaca-------atatctaaatatacaaaagttgtgcaccatgtggtgaa |
725 |
Q |
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| T |
17744401 |
ataattgatcaaattccaactacaaagaaagatatgcttgttttaattaaaaacactatcttaaatctaaatatacaaaagttgtgcaccatgtggtgaa |
17744500 |
T |
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| Q |
726 |
tttgatctcctaagaggaggttttccataaccatgttg |
763 |
Q |
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| T |
17744501 |
tttgatctcctaagaggaggttttccataaccatgttg |
17744538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 17743796 - 17743935
Alignment:
| Q |
5 |
acaagttgttttagttcttgttgttaaatcactgtatttttgaatgattatttttgtagacatgctt--------------------ccaaataaaagaa |
84 |
Q |
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| T |
17743796 |
acaagttgttttggttcttgttgttaaatcaatgtatttttgaatgattatttttgtagacatgcttgaaacattataaattgttctccaaataaaagaa |
17743895 |
T |
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| Q |
85 |
gttcataatttaatttctaagtcgagattttcgttatctt |
124 |
Q |
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| T |
17743896 |
gctcaaaatttaatttctaagtcgagattttcgttatctt |
17743935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 17744216 - 17744288
Alignment:
| Q |
250 |
tttccatttgtacttttaattatcaattaaattgctctctgtttcaattttgtttgcttgttttcattaatttg |
323 |
Q |
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| T |
17744216 |
tttccatttgtacttttaattatcaattaaattgctctctatttcaattttgttttc-tgttttcattaatttg |
17744288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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