View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0656-Insertion-2 (Length: 429)
Name: NF0656-Insertion-2
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0656-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Original strand, 42461220 - 42461646
Alignment:
| Q |
6 |
caaaaacatgatgtgaatttttcccttgagtcaaattttagtaaactttatttctgaagtccagtatatatt---attaatttgttatggtatgggaaac |
102 |
Q |
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| T |
42461220 |
caaaaacatgatgtgaatttttcccttgagtcaaattttagtaaactttatttctgaagtccagtatatattattattaatttgttatggtatgggaaac |
42461319 |
T |
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| Q |
103 |
tgtcacttttctccttttgacagtcctttaaaaatgatgatcaattcactactttaacatgtgtgtttattatcatatatcagttgtgattatatctgtt |
202 |
Q |
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| T |
42461320 |
tgtcacttttctccttttgacagtcctttaaaaatgatgatcaattcactactttaacatgtgtgtttattatcatatatcagttgtgattatatctgtt |
42461419 |
T |
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| Q |
203 |
atctaacctatttgtcaatatgaacagggcatttgactgctcgaagcgatgtttacggttttggagtggtgctcctggaattacttattggtaggagagc |
302 |
Q |
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| T |
42461420 |
atctaacctatttgtcaatatgaacagggcatttgactgctcgaagcgatgtttacggttttggagtggtgctactggaattacttattggtaggagagc |
42461519 |
T |
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| Q |
303 |
actatacaagagtaggcctagccgagagcataacttgtttgaatgggctcgcccgttgttgaatcataataaaaaacttctgaaaattttagacccgaat |
402 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42461520 |
actagacaagagtaggcctagccgagagcataacttggttgaatgggctcgcccattgttgaatcataataaaaaacttctgaaaattttagacccgaaa |
42461619 |
T |
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| Q |
403 |
gttgaacggcaatattcatgtaaaact |
429 |
Q |
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| T |
42461620 |
gttgaagggcaatattcaagtaaaact |
42461646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 154 - 293
Target Start/End: Original strand, 49020553 - 49020692
Alignment:
| Q |
154 |
ctttaacatgtgtgtttattatcatatatcagttgtgattatatctgttatctaacctatttgtcaatatgaacagggcatttgactgctcgaagcgatg |
253 |
Q |
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||||||||||||||| | ||||||| |||||||||||| ||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||| |
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| T |
49020553 |
ctttaacatgtgtgtctgttatcattgatcagttgtgatcatatctgttatgtaacttatttgtcaatatgaataaggcatttgactgctcgaagcgatg |
49020652 |
T |
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| Q |
254 |
tttacggttttggagtggtgctcctggaattacttattgg |
293 |
Q |
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| T |
49020653 |
tgtatggttttggagtggtgctacttgaattgcttattgg |
49020692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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