View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0656_low_1 (Length: 772)
Name: NF0656_low_1
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0656_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 40 - 475
Target Start/End: Complemental strand, 56312712 - 56312280
Alignment:
| Q |
40 |
atgaattagagcagtagtatttggtaattaaggagaagtaattattatataccttttgatatcgttcggtttcatgttggggtaatctatactcattcat |
139 |
Q |
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| T |
56312712 |
atgaattagagcagtaatatttggtaattaaggagaagtaattattatataccttttgatatcgttcggtttcatgttggggtaatctatactcattcat |
56312613 |
T |
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| Q |
140 |
aatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaacggaagttttcagttcgaatcatccta |
239 |
Q |
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| T |
56312612 |
aatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaacggaagttttcagttcgaatcatccta |
56312513 |
T |
|
| Q |
240 |
tctgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttcctatctcgaggcacataaaagtaccactcct |
339 |
Q |
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| T |
56312512 |
tccgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttcctatctcgaggcacataaaagtaccactcct |
56312413 |
T |
|
| Q |
340 |
tctctccgattgctgccaaagctgctcatcatcatcatatgcaattcatatatatcaaattcaatcacataactaaatatataacagcttcat---atca |
436 |
Q |
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| T |
56312412 |
tctctccgattgctgccaaagctgctcatcatcatcat---ca--tcat-catatcaaattcaatcacataactaaatatataacagcttcatatcatca |
56312319 |
T |
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| Q |
437 |
tattttcgtatgtatgtgaagtgaattattaaattaaat |
475 |
Q |
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| T |
56312318 |
tatttgcgtatgtatgtgaagtgaattattaaattaaat |
56312280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 706 - 772
Target Start/End: Complemental strand, 56312079 - 56312013
Alignment:
| Q |
706 |
ccaggaagttcccaagggtcatagcgataaagatcgagaaaagtaataagctcaacgttgaaacgtt |
772 |
Q |
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| T |
56312079 |
ccaggaagttcccaagggtcatagcgataaagatcgagaaaagtaataagctcaacgttgaaacgtt |
56312013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 56312189 - 56312123
Alignment:
| Q |
593 |
taaatcaaagagggatggcaacnnnnnnnngggtttccagaattgctttaggaaaggggaagttctc |
659 |
Q |
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| T |
56312189 |
taaatcaaagagggatggcaacaaaaaaaagggtttccagaattgctttaggaaaggggaagttctc |
56312123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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