View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0656_low_13 (Length: 252)
Name: NF0656_low_13
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0656_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 2724613 - 2724405
Alignment:
| Q |
15 |
gaacttagtagcaatagtacaattcgaattttgaatcatgttattcaacctagtccatccccattgttcaagctcctcttgaactccgggaattgcaaat |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2724613 |
gaacttagtagcaatagtacaatttgaattttgaatcatgttattcaacctagtccatccccattgttcaagctcctcttgaactccgggaattgcaaat |
2724514 |
T |
|
| Q |
115 |
ctcccacttttgaaagctctctcttccacaaatttcaaatgcttaaatttgttgtatcttttattttgtggctctcccttaaacagaaaggaaaaatctc |
214 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2724513 |
ctcccacttttgaaagccctttcttccacaaatttcaaatgcttaaatttgttgtatcttttattttgtggttctcccttaaacagaaaggaaaaatctc |
2724414 |
T |
|
| Q |
215 |
gtcctcttt |
223 |
Q |
| |
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||||||||| |
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| T |
2724413 |
gtcctcttt |
2724405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 5796896 - 5797083
Alignment:
| Q |
36 |
attcgaattttgaatcatgttattcaacctagtccatccccattgttcaagctcctcttgaactccgggaattgcaaatctcccacttttgaaagctctc |
135 |
Q |
| |
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|||||| | ||||||||||||||||||| |||||||||| | ||||||||||||||||| ||| | ||||||| | ||||||||| |||||||| |
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| T |
5796896 |
attcgattgttgaatcatgttattcaacttagtccatcctctcctttcaagctcctcttgaattcccgaaattgcatacttcccactttgaaaagctcta |
5796995 |
T |
|
| Q |
136 |
tcttccacaaatttcaaatgcttaaatttgttgtatcttttattttgtggctctcccttaaacagaaaggaaaaatctcgtcctcttt |
223 |
Q |
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| T |
5796996 |
tcttccccaaaatgcaaatgcttgaacttgttgtatctcttattttgtgcctctcccttaaaaagaaatgaacaatctcttcctcttt |
5797083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 17377236 - 17377103
Alignment:
| Q |
40 |
gaattttgaatcatgttattcaacctagtccatccccattgttcaagctcctcttgaactccgggaattgcaaatctcccacttttgaaagctctctctt |
139 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||| | ||||||||||||||||| || |||| || | ||||||||| |||||||||||||| |
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| T |
17377236 |
gaatgttgaatcatgctattcaacttagtccatcctctcctttcaagctcctcttgaatgcccaaaatttcatacttcccactttggaaagctctctctt |
17377137 |
T |
|
| Q |
140 |
ccacaaatttcaaatgcttaaatttgttgtatct |
173 |
Q |
| |
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||||||||| |||||||| || |||||| |||| |
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| T |
17377136 |
ccacaaattgaaaatgcttgaacttgttgcatct |
17377103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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