View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0656_low_15 (Length: 248)

Name: NF0656_low_15
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0656_low_15
NF0656_low_15
[»] chr4 (11 HSPs)
chr4 (101-165)||(5466565-5466629)
chr4 (46-102)||(20069620-20069677)
chr4 (46-101)||(26252559-26252615)
chr4 (49-91)||(31083422-31083464)
chr4 (46-102)||(31943949-31944005)
chr4 (46-104)||(31082182-31082241)
chr4 (63-104)||(48259820-48259862)
chr4 (63-103)||(31090400-31090441)
chr4 (46-103)||(46046746-46046803)
chr4 (63-102)||(3273620-3273660)
chr4 (46-90)||(15640728-15640772)
[»] chr6 (4 HSPs)
chr6 (196-248)||(9290065-9290117)
chr6 (196-248)||(24497659-24497711)
chr6 (46-105)||(32017825-32017885)
chr6 (63-107)||(24732276-24732321)
[»] chr8 (5 HSPs)
chr8 (196-248)||(5660924-5660976)
chr8 (196-248)||(18558763-18558815)
chr8 (63-112)||(7689862-7689912)
chr8 (46-105)||(10108366-10108426)
chr8 (46-90)||(14820307-14820351)
[»] chr5 (11 HSPs)
chr5 (196-248)||(26701396-26701448)
chr5 (196-248)||(26971129-26971181)
chr5 (196-248)||(40690941-40690993)
chr5 (196-248)||(41310056-41310108)
chr5 (196-248)||(25073787-25073839)
chr5 (196-248)||(25131758-25131810)
chr5 (55-103)||(29445136-29445185)
chr5 (204-248)||(365940-365984)
chr5 (46-90)||(24837491-24837535)
chr5 (63-106)||(30512283-30512327)
chr5 (63-106)||(30552623-30552667)
[»] chr2 (2 HSPs)
chr2 (196-248)||(26223821-26223873)
chr2 (46-101)||(44098944-44099000)
[»] chr1 (6 HSPs)
chr1 (199-248)||(20569781-20569830)
chr1 (196-248)||(26474027-26474079)
chr1 (52-90)||(27039650-27039688)
chr1 (199-239)||(20573702-20573742)
chr1 (196-236)||(27301309-27301349)
chr1 (46-90)||(43401072-43401116)
[»] scaffold0477 (1 HSPs)
scaffold0477 (63-111)||(5086-5134)
[»] chr7 (6 HSPs)
chr7 (199-239)||(17513323-17513363)
chr7 (199-239)||(17539851-17539891)
chr7 (196-248)||(41678310-41678363)
chr7 (197-246)||(25806514-25806563)
chr7 (46-90)||(38879735-38879779)
chr7 (196-248)||(43942421-43942472)
[»] chr3 (8 HSPs)
chr3 (48-101)||(14161871-14161925)
chr3 (63-111)||(21632891-21632940)
chr3 (46-103)||(30500362-30500420)
chr3 (46-102)||(16722313-16722370)
chr3 (46-102)||(33372405-33372462)
chr3 (63-110)||(16721982-16722030)
chr3 (46-101)||(19720333-19720389)
chr3 (46-109)||(35741906-35741970)
[»] scaffold0185 (1 HSPs)
scaffold0185 (46-102)||(3868-3925)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 5466565 - 5466629
Alignment:
Q  101 ctttattttatagaagcacaagaccaatgcatgcgaaaactagctaattttcaacaaagttggat 165  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5466565 ctttattttatagaagcacaagaccaatgcatacgaaaactagctaattttcaacaaagttggat 5466629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 20069620 - 20069677
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaa-ggatatttaccct 102  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  20069620 acagggaccaaaactggaattcgctcatattacagggacgaaaagggatatttaccct 20069677  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 26252559 - 26252615
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 101  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  26252559 acaggaactaaaactggaattcgctaatattacagggacgaaaagagatatttaccc 26252615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 31083422 - 31083464
Alignment:
Q  49 ggaaccaaaactgtaattcgctcatattacagggacgaaaagg 91  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  31083422 ggaaccaaaaccggaattcgctcatattacagggacgaaaagg 31083464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 31944005 - 31943949
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaaggatatttaccct 102  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||  ||||||||||    
T  31944005 acaggaactaaaaccggaattcgctaatattacagggacgaaaagagtatttaccct 31943949  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 31082241 - 31082182
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaa-ggatatttacccttt 104  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||| || ||||||||||||    
T  31082241 acagggaccaaacctggaattcgctcatattatagggacgaaaaggggtatttacccttt 31082182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 48259862 - 48259820
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttacccttt 104  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  48259862 aattcgctaatattacagggacgaaaagagatatttacccttt 48259820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 31090400 - 31090441
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccctt 103  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  31090400 aattcgctaatattacagggacgaaaagagatatttaccctt 31090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 46046746 - 46046803
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaaggatatttaccctt 103  Q
    ||||| || ||||| | |||||||| |||||||||||||||||| | |||||||||||    
T  46046746 acagggactaaaaccggaattcgctaatattacagggacgaaaaaggtatttaccctt 46046803  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 3273660 - 3273620
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccct 102  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  3273660 aattcgctaatattacagggacgaaaagagatatttaccct 3273620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 15640772 - 15640728
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 90  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||    
T  15640772 acaggaactaaaaccggaattcgctaatattacagggacgaaaag 15640728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9290117 - 9290065
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  9290117 cgcgtgttttccggcggctaaaaaatgtatgttccggcggttttagccgccac 9290065  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 24497659 - 24497711
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  24497659 cgcgtgtttttcggcggctaaaaaatgtatgttccggcggttttagccgccac 24497711  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 32017825 - 32017885
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttacccttta 105  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| |||||||||||||||    
T  32017825 acagggactaaaaccggaattcgctaatattacagggacgaaaagagatatttacccttta 32017885  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 24732276 - 24732321
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccctttatt 107  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||    
T  24732276 aattcgctaatattacagggacgaaaagaggtatttaccctttatt 24732321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 5660976 - 5660924
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  5660976 cgcgtgttttccgacggctaaaaaatgtatgttccggcggttttagccgccac 5660924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 18558763 - 18558815
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  18558763 cgcgtgtttttcggcggctaaaaaatgtatgttccggcggttttagccgccac 18558815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 7689862 - 7689912
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccctttattttata 112  Q
    |||||||| ||||||||||||||||||| | ||||||||||||| ||||||    
T  7689862 aattcgctaatattacagggacgaaaagaggtatttaccctttaatttata 7689912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 10108426 - 10108366
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttacccttta 105  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| | |||||||||||||    
T  10108426 acagggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttacccttta 10108366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 14820351 - 14820307
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 90  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||    
T  14820351 acaggaactaaaaccggaattcgctaatattacagggacgaaaag 14820307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 26701448 - 26701396
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  26701448 cgcgtgttttccggtggctaaaaaatgtatgttccggcggttttagccgccac 26701396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 26971181 - 26971129
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  26971181 cgcgtgttttccggtggctaaaaaatgtatgttccggcggttttagccgccac 26971129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 40690993 - 40690941
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  40690993 cgcgtgttttccggcggctaaaaaatgtatgttctggcggttttagccgccac 40690941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 41310108 - 41310056
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  41310108 cgcgtgttttccggcggctaaaaaatgtatattccggcggttttagccgccac 41310056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 25073839 - 25073787
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    ||||||||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  25073839 cgcgtgttttccggcagctaaaaaatgtatgtttcggcggttttagccgccac 25073787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 25131810 - 25131758
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    ||||||||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  25131810 cgcgtgttttccggcagctaaaaaatgtatgtttcggcggttttagccgccac 25131758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 29445136 - 29445185
Alignment:
Q  55 aaaactgtaattcgctcatattacagggacgaaaag-gatatttaccctt 103  Q
    ||||||| |||||||| ||||||||||||||||||| |||||| ||||||    
T  29445136 aaaactggaattcgctaatattacagggacgaaaagagatattaaccctt 29445185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 365940 - 365984
Alignment:
Q  204 ttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||||||| || ||||| |||||||||| ||||||||    
T  365940 ttccggcggctaaaaattgcttgttgcggcggttttagccgccac 365984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 24837491 - 24837535
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 90  Q
    ||||| || ||||||| |||||||| |||||||||||||||||||    
T  24837491 acagggactaaaactggaattcgctaatattacagggacgaaaag 24837535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 30512327 - 30512283
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccctttat 106  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||    
T  30512327 aattcactaatattacagggacgaaaagagatatttaccctttat 30512283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 30552667 - 30552623
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccctttat 106  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||    
T  30552667 aattcactaatattacagggacgaaaagagatatttaccctttat 30552623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 26223873 - 26223821
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  26223873 cgcgtgttttccggcggctaaaaaatgtatattccggcggttttagccgccac 26223821  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 44098944 - 44099000
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 101  Q
    ||||||||||||||   |||||||||||||||||||||||||||| |||||||||||    
T  44098944 acaggaaccaaaaccagaattcgctcatattacagggacgaaaagagatatttaccc 44099000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 20569781 - 20569830
Alignment:
Q  199 gtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  20569781 gtgttttcccgcggctaaaaaatgtatgttccggcggttttagccgccac 20569830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 26474079 - 26474027
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||    
T  26474079 cgcgtgttttccagcggctaaaaaatgtatgttccggcagttttagccgccac 26474027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 27039688 - 27039650
Alignment:
Q  52 accaaaactgtaattcgctcatattacagggacgaaaag 90  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  27039688 accaaaaccggaattcgctcatattacagggacgaaaag 27039650  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 20573702 - 20573742
Alignment:
Q  199 gtgttttccggcggctaaaaaatgtttgttccggcggtttt 239  Q
    ||||||||||||||||||||||||| ||||| ||| |||||    
T  20573702 gtgttttccggcggctaaaaaatgtatgttctggcagtttt 20573742  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 27301309 - 27301349
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggt 236  Q
    |||||||||||||||||||||||||| | ||||||| ||||    
T  27301309 cgcgtgttttccggcggctaaaaaatatatgttccgacggt 27301349  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 43401072 - 43401116
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 90  Q
    ||||| |||||||||| |||||| |||||||||||| ||||||||    
T  43401072 acagggaccaaaactgaaattcgatcatattacaggaacgaaaag 43401116  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 5086 - 5134
Alignment:
Q  63 aattcgctcatattacagggacgaaaaggatatttaccctttattttat 111  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  5086 aattcgctaatattacatggacgaaaagggtatttaccctttattttat 5134  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 17513363 - 17513323
Alignment:
Q  199 gtgttttccggcggctaaaaaatgtttgttccggcggtttt 239  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17513363 gtgttttccggcggctaaaaaatgtatgttccggcggtttt 17513323  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 17539851 - 17539891
Alignment:
Q  199 gtgttttccggcggctaaaaaatgtttgttccggcggtttt 239  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17539851 gtgttttccggcggctaaaaaatgtatgttccggcggtttt 17539891  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 41678310 - 41678363
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaa-tgtttgttccggcggtttttgccgccac 248  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||    
T  41678310 cgcgtgttttccggcagctaaaaaaatgtatgttccggcggttttagccgccac 41678363  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 25806514 - 25806563
Alignment:
Q  197 gcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgcc 246  Q
    |||| ||||| | |||||||||||||| ||||||||||||||| ||||||    
T  25806514 gcgttttttctgacggctaaaaaatgtatgttccggcggttttagccgcc 25806563  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 38879779 - 38879735
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 90  Q
    |||||||| |||| || |||||||| |||||||||||||||||||    
T  38879779 acaggaactaaaattggaattcgctaatattacagggacgaaaag 38879735  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 43942472 - 43942421
Alignment:
Q  196 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttttgccgccac 248  Q
    |||||||||| ||||||||| ||||||| ||||||||| ||||| ||||||||    
T  43942472 cgcgtgtttttcggcggcta-aaaatgtatgttccggcagttttagccgccac 43942421  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 14161925 - 14161871
Alignment:
Q  48 aggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 101  Q
    |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  14161925 aggaactaaaactggaattcgctaatattacagggacgaaaagagatatttaccc 14161871  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 21632940 - 21632891
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccctttattttat 111  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  21632940 aattcgctaatattacagggacgaaaagaggtatttaccctttattttat 21632891  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 30500362 - 30500420
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccctt 103  Q
    ||||| || ||||||| |||||||| ||||||||||||||||||| | |||||||||||    
T  30500362 acagggactaaaactggaattcgctaatattacagggacgaaaagaggtatttaccctt 30500420  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 16722313 - 16722370
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccct 102  Q
    ||||| || ||||||| |||||||| ||||||||||||||||||| | ||||||||||    
T  16722313 acagggactaaaactgaaattcgctaatattacagggacgaaaagaggtatttaccct 16722370  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 33372462 - 33372405
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccct 102  Q
    |||||||| |||||   |||||||| ||||||||||||||||||| ||||||||||||    
T  33372462 acaggaactaaaaccagaattcgctaatattacagggacgaaaagagatatttaccct 33372405  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 16722030 - 16721982
Alignment:
Q  63 aattcgctcatattacagggacgaaaag-gatatttaccctttatttta 110  Q
    |||||||| ||||||||||||||||||| | |||||||||||| |||||    
T  16722030 aattcgctaatattacagggacgaaaagaggtatttaccctttttttta 16721982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 19720389 - 19720333
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 101  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| |||||||||||    
T  19720389 acagggactaaaaccggaattcgctaatattacagggacgaaaagagatatttaccc 19720333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 35741906 - 35741970
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccctttatttt 109  Q
    ||||| || ||||||| |||||||| ||||||||||||| ||||| | |||| ||||||||||||    
T  35741906 acagggactaaaactggaattcgctaatattacagggaccaaaagtggtattaaccctttatttt 35741970  T

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Target: scaffold0185 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 3925 - 3868
Alignment:
Q  46 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccct 102  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| ||||||||||||    
T  3925 acagggactaaaaccggaattcgctaatattacagggacgaaaagagatatttaccct 3868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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