View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0656_low_2 (Length: 609)
Name: NF0656_low_2
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0656_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 88 - 572
Target Start/End: Original strand, 17681590 - 17682085
Alignment:
| Q |
88 |
ggggtaacgaatctgtgaagcaattactagcaggttcgatcgagctggtggacaaagtacgcggtttgactagactgagtaaagctatgtgtggctaaga |
187 |
Q |
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| T |
17681590 |
ggggtaacgaatatgtgaagcaattacaagcatgttcgattcagctgtcggacaaagtacgcggtttgattagactgagtaaggctatgtgtggctaaga |
17681689 |
T |
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| Q |
188 |
atgttttatccgttgaagcttaatccgatgataaaagaagaagtgttaggcagtaggagaattagaatacgcatttgaatatactctttgtatc-----a |
282 |
Q |
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| T |
17681690 |
atgttttgtccgttgcagcttaatccgatgataaaagaagaagtgttaggcagtaggagaattagaatacgcatttgaatatactctttgtatcatcaaa |
17681789 |
T |
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| Q |
283 |
acaaattcaaatgggtgaaaacaatgatgtagtgaaacaaaaactagcaaagttgatccagctggccgacaaagtagcgaaagcagcagaggaggcaatc |
382 |
Q |
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| T |
17681790 |
tcaaattcaaatgggtaaaaacaattattctttgaaacgaatgctagcaaatttggtccagctggccgacaaagtagcgaaagcagcagagaaggcaatc |
17681889 |
T |
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| Q |
383 |
ccgttcaagcaagaatgtgtggacatcaaatccaaagtggagaaactctccgatcttctccgacaggc------gttcatctctaaactgaacaagcatc |
476 |
Q |
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| T |
17681890 |
ccgttcaaacaagaatgtggggatatcagatccaaagtggagaaactctccgatcttctacggcaggcagcgatgatcacctacgaactgtatgagcctc |
17681989 |
T |
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| Q |
477 |
cgactgtgcgtatcttccgggacaccaagaaggtactcaacaaggctctttccttgcttctcaagaagcgcatattcatcatcatccccatctccg |
572 |
Q |
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| T |
17681990 |
cgactcggcatatcttctgggacacactaaatatacttaacaaggctctttccttgcttctcaagaagcgcatattcatcatcatccccgtctccg |
17682085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 17681427 - 17681470
Alignment:
| Q |
14 |
agagtaagaaaaagacatgttttgtctgttgcgcagcttaaccc |
57 |
Q |
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| T |
17681427 |
agagtaagaaaaagacatgttttgtctgctgcgaagcttaaccc |
17681470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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