View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0656_low_4 (Length: 510)
Name: NF0656_low_4
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0656_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 72 - 373
Target Start/End: Original strand, 44604933 - 44605234
Alignment:
| Q |
72 |
catcatcaaactccacagtcaaaataccaataggatcaagttgaattgagcgaccccaaaatttgttttttaaattgctatctccccaaaatttccagcc |
171 |
Q |
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| T |
44604933 |
catcatcaaactccacggtcaaaataccaataggatcaagttgaattgagcgaccccaaaatttgttttttaaattactatccccccaaaatttccagcc |
44605032 |
T |
|
| Q |
172 |
ttgaccctcacaatgacatgctacaaccatagggtgatgactcacctatattagaatgaatagggtaagtatttcactttcaaccaacaatattgtgata |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44605033 |
ttgaccctcacaatgacatgctacaaccatagggtgatgactcacctatattagaatgaatagcttaagtatttcactttcaaccaacaatattgtgata |
44605132 |
T |
|
| Q |
272 |
aatatggtcaatttaaattaagggaccaaattgatgataaatatggttgtggtctttttaaaattggagaccttctagtctctattagtacacgttttta |
371 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44605133 |
aatatggtcaatttaaattaagggacaaaattgatgataaatatggttgcggtccttttaaaattggagaccttctagtctctattagtacacgttttta |
44605232 |
T |
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| Q |
372 |
gt |
373 |
Q |
| |
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|| |
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| T |
44605233 |
gt |
44605234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 32886848 - 32886710
Alignment:
| Q |
72 |
catcatcaaactccacagtcaaaataccaataggatcaagttgaattgagcgaccccaaaatttgttttttaaattgctatctccccaaaatttccagcc |
171 |
Q |
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|||||||||| |||| ||||||| |||| | ||| ||||| ||||||||||| |||||||||||| ||||||| |||||||| ||| |||||||||| || |
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| T |
32886848 |
catcatcaaattccaaagtcaaagtaccgacagggtcaagctgaattgagcggccccaaaatttgctttttaagttgctatcccccgaaaatttccatcc |
32886749 |
T |
|
| Q |
172 |
ttgaccctcacaatgacatgctacaaccatagggtgatg |
210 |
Q |
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| T |
32886748 |
tgtaccctcacagtgacatgcaactatcataggatgatg |
32886710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 418 - 504
Target Start/End: Complemental strand, 37240463 - 37240377
Alignment:
| Q |
418 |
attcaaacccaagttttgctacagaataaaataagaaattgtacatagaaacaccaagaaaaatatctcaaaacccccatgttacct |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37240463 |
attcaaacccaagttttgctacagaataaaataagaaattgtacatagaaacaccaagaaaaatatctcaaaacccccatgttacct |
37240377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 24482617 - 24482471
Alignment:
| Q |
72 |
catcatcaaactccacagtcaaaataccaataggatcaagttgaattgagcgaccccaaaatttgttttttaaattgctatctccccaaaatttccagcc |
171 |
Q |
| |
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|||||||||| || | ||||||||||||| |||||||||||||||||| || |||||||||||| | ||||| ||||||||| ||||||||||||| || |
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| T |
24482617 |
catcatcaaattctaatgtcaaaataccaacaggatcaagttgaattgatcggccccaaaatttgctctttaagttgctatctgcccaaaatttccaacc |
24482518 |
T |
|
| Q |
172 |
ttgaccctcacaatgacatgctacaaccatagggtgatgactcacct |
218 |
Q |
| |
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| ||||||||| |||||||| || | ||||||||| ||||| |||| |
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| T |
24482517 |
tgtaccctcacagtgacatgcaactatcatagggtggtgactgacct |
24482471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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