View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0656_low_5 (Length: 466)

Name: NF0656_low_5
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0656_low_5
NF0656_low_5
[»] chr4 (14 HSPs)
chr4 (248-451)||(24299995-24300199)
chr4 (30-185)||(24298357-24298512)
chr4 (134-187)||(24298815-24298868)
chr4 (182-235)||(23447727-23447780)
chr4 (111-179)||(23402437-23402505)
chr4 (108-212)||(26828190-26828292)
chr4 (30-89)||(23447823-23447878)
chr4 (126-179)||(23414976-23415028)
chr4 (110-195)||(43698620-43698704)
chr4 (30-60)||(23423357-23423387)
chr4 (30-60)||(23875566-23875596)
chr4 (131-177)||(31632982-31633028)
chr4 (118-179)||(26436169-26436230)
chr4 (30-74)||(26828130-26828174)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 248 - 451
Target Start/End: Original strand, 24299995 - 24300199
Alignment:
Q  248 aagaattatagcattggaagcagcagtatcagccacctcgtttgcgtgcggtctggttgcttgtgttggagctttggatgcagtgnnnnnnnnnnn--ca 345  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||             ||    
T  24299995 aagaactatagcattggcagcagcagtatcagccacctcatttgcgtgcggtctggttgcttgtgttagagctttggatgtagtggtttttttttttcca 24300094  T
Q  346 ggggcggtgcattcgcattagagtttggatcaggaagatgatgggagaaaattttatgcaccgcattagggtttcattcctggtgtaatccggtatggga 445  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24300095 ggggcggtgcattcgcattagagtttggatcaggaagacgatgggagaaaattttatgcaccgcattagggtttcattcctggtgtaatcc-gtatggga 24300193  T
Q  446 tttcat 451  Q
    ||||||    
T  24300194 tttcat 24300199  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 24298357 - 24298512
Alignment:
Q  30 ggaaagtctccaaagaaggcttagatctgattctaggaacaattagatcttttaattagttttctttcnnnnnnnnnngcttttgaagttgtgatgaagt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  24298357 ggaaagtctccaaagaaggcttagatctgattctaggaacaattagatcttttaattagttttctttcttttttttttgcttttgaagttgtgatgaagt 24298456  T
Q  130 aattggatcttgttgatcctttttgtgtatgatagtggtggaattaatgaaaattg 185  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24298457 aattgtatcttgttgatcctttttgtgtatgatagtggtggaattaatgaaaattg 24298512  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 24298815 - 24298868
Alignment:
Q  134 ggatcttgttgatcctttttgtgtatgatagtggtggaattaatgaaaattggg 187  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  24298815 ggatcttgttgatcctttttgtgtatgataatggtaaaattaatgaaaattggg 24298868  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 23447780 - 23447727
Alignment:
Q  182 attgggcttcaaaattgtttctattctacaatttcaatgagtttatattctaat 235  Q
    ||||| |||||||||||||||||||||||||||||  | |||||||||||||||    
T  23447780 attggacttcaaaattgtttctattctacaatttctttaagtttatattctaat 23447727  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 23402437 - 23402505
Alignment:
Q  111 tttgaagttgtgatgaagtaattggatcttgttgatcctttttgtgtatgatagtggtggaattaatga 179  Q
    ||||||| ||| |||||||| |  ||||| ||||||||| ||||||||||||| |||||||||||||||    
T  23402437 tttgaagctgtaatgaagtagtgagatctggttgatcctctttgtgtatgataatggtggaattaatga 23402505  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 26828190 - 26828292
Alignment:
Q  108 gcttttgaagttgtgatgaagtaattggatcttgttgatcctttttgtgtatgatagtggtggaattaatgaaaattgggcttcaaaattgtttctattc 207  Q
    |||||||||| ||| ||||||||||||||||||  ||||| ||||||| ||||| | |||| || |||||| | ||||| |||||||| ||||||||||     
T  26828190 gcttttgaagatgtaatgaagtaattggatctttctgatcttttttgtttatgaaaatggt-gatttaatg-atattggtcttcaaaaatgtttctattt 26828287  T
Q  208 tacaa 212  Q
    |||||    
T  26828288 tacaa 26828292  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 23447878 - 23447823
Alignment:
Q  30 ggaaagtctccaaagaaggcttagatctgattctaggaacaattagatcttttaattagt 89  Q
    |||||||||||||||||||||||||||    |||||||||||||||||  ||||||||||    
T  23447878 ggaaagtctccaaagaaggcttagatc----tctaggaacaattagataatttaattagt 23447823  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 23415028 - 23414976
Alignment:
Q  126 aagtaattggatcttgttgatcctttttgtgtatgatagtggtggaattaatga 179  Q
    ||||||| |||||| |||||||||||| |||||||||| |||||||||||||||    
T  23415028 aagtaatgggatctggttgatcctttt-gtgtatgataatggtggaattaatga 23414976  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 43698704 - 43698620
Alignment:
Q  110 ttttgaagttgtgatgaagtaattggatcttgttgatcctttttgtgtatgatagtggtggaattaatgaaaattgggcttcaaaa 195  Q
    |||| ||||||| |||||||||| |||| | |||| ||| |||||||||| | |||||| ||||||||| || |||||||||||||    
T  43698704 ttttaaagttgtaatgaagtaatgggatatcgttggtcccttttgtgtatcaaagtggtagaattaatg-aatttgggcttcaaaa 43698620  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 23423387 - 23423357
Alignment:
Q  30 ggaaagtctccaaagaaggcttagatctgat 60  Q
    |||||||||||||||||||||||||||||||    
T  23423387 ggaaagtctccaaagaaggcttagatctgat 23423357  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 23875566 - 23875596
Alignment:
Q  30 ggaaagtctccaaagaaggcttagatctgat 60  Q
    |||||||||||||||||||||||||||||||    
T  23875566 ggaaagtctccaaagaaggcttagatctgat 23875596  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 31632982 - 31633028
Alignment:
Q  131 attggatcttgttgatcctttttgtgtatgatagtggtggaattaat 177  Q
    |||||||||||||||||||||||||  |||| | |||||||||||||    
T  31632982 attggatcttgttgatcctttttgttaatgaaaatggtggaattaat 31633028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 26436169 - 26436230
Alignment:
Q  118 ttgtgatgaagtaattggatcttgttgatcctttttgtgtatgatagtggtggaattaatga 179  Q
    |||| ||||| | |||||||||||||||||| ||||||  |||| | |||||||||||||||    
T  26436169 ttgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaatga 26436230  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 26828130 - 26828174
Alignment:
Q  30 ggaaagtctccaaagaaggcttagatctgattctaggaacaatta 74  Q
    ||||||||||| ||||| |||||||||||||| |||||| |||||    
T  26828130 ggaaagtctcctaagaaagcttagatctgattttaggaagaatta 26828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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