View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0656_low_9 (Length: 331)

Name: NF0656_low_9
Description: NF0656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0656_low_9
NF0656_low_9
[»] chr6 (1 HSPs)
chr6 (1-235)||(5691041-5691276)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5691041 - 5691276
Alignment:
Q  1 cattgtacattagctcttggcaacttcaaactcagtccctcaacttttgttccctatgaaaaattattcacaatcaaaccaattttgaaatcatataaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5691041 cattgtacattagctcttggcaacttcaaactcagtccctcaacttttgttccctatgaaaaattattcacaatcaaaccaattttgaaatcatataaaa 5691140  T
Q  101 atgattcacgattaaacaaattttgtaatcacaacaaaactaattttgtatgttcttgtgatagtcaccaaaattaaagagtgtcaaaaatttacacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5691141 atgattcacgattaaacaaattttgtaatcacaacaaaactaattttgtatgttcttgtgatagtcaccaaaattaaagagtgtcaaaaatttacacata 5691240  T
Q  201 aatgattgtttcac-tccttaagccttagattctgt 235  Q
    |||||||||||||| |||||||||||||||||||||    
T  5691241 aatgattgtttcacttccttaagccttagattctgt 5691276  T

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