View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_high_2 (Length: 295)
Name: NF0657_high_2
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 32813301 - 32813065
Alignment:
| Q |
8 |
ccaacaatatcagtagacacaacattatcctgtgtaaccgaggattctcttcaaatctccctcagatgcttgcctaggaaaaatgtgtagacaagagaaa |
107 |
Q |
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| T |
32813301 |
ccaacaaaatcagtagacacaacattatcatgtgtaaccaaggattcccttcaaatctccctcagatgctttgctatgaaaaatgtgtagacaagaggaa |
32813202 |
T |
|
| Q |
108 |
attagcattcactatagtaactaaattatagg-nnnnnnntaaacataaaatatccttgccccttaaaagcaaaagttttttattcttacttaattgcag |
206 |
Q |
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| T |
32813201 |
attagcattcactatagtaactaaattataggaaaaaaaaaaaacataaaatatctttgtcccttacaagcaaaagttttttattcttacttaattgcag |
32813102 |
T |
|
| Q |
207 |
ctttaattttatcacaactagctcccttttcaagtct |
243 |
Q |
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||||| |||||||| |||||||||||||||||||||| |
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| T |
32813101 |
ctttagttttatcataactagctcccttttcaagtct |
32813065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 32813039 - 32812996
Alignment:
| Q |
243 |
tctacagttggaactctgaatgacattcctgtcaactttttgtt |
286 |
Q |
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|
| T |
32813039 |
tctacagttggaactctgaatgacattcctgtcaactttttgtt |
32812996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 7900764 - 7901006
Alignment:
| Q |
8 |
ccaacaatatcagtagacacaacattatcct--gtgtaaccgaggattctcttcaaatctccctcagatgcttgcctaggaaaaatgtgtagacaagaga |
105 |
Q |
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||||||| ||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
7900764 |
ccaacaaaatcagtagacacaacatcatcctctgtgtaaccaaggattcccttcaaatctccctcagatgcttgcctattaaaaatgtgtagacaataga |
7900863 |
T |
|
| Q |
106 |
aaattagcattcactatagtaactaaattatagg-----nnnnnnntaaacataaaatatccttgccccttaaaagcaaaagttttttattcttacttaa |
200 |
Q |
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|||||||||||||||||||||| || |||||||| |||||| | |||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
7900864 |
aaattagcattcactatagtaaatacattataggaagaaaaaaaaataaacaatatatattcttgtcccttaaaagcaaaagttttttattcttacttaa |
7900963 |
T |
|
| Q |
201 |
ttgcagctttaattttatcacaactagctcccttttcaagtct |
243 |
Q |
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||||||||||||||| |||| |||| ||||||||||||||||| |
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| T |
7900964 |
ttgcagctttaatttcatcataacttgctcccttttcaagtct |
7901006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 7901032 - 7901075
Alignment:
| Q |
243 |
tctacagttggaactctgaatgacattcctgtcaactttttgtt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
7901032 |
tctacagttggaactctgaatgacattcctgtcaacttattgtt |
7901075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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