View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_high_3 (Length: 279)
Name: NF0657_high_3
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 24064488 - 24064294
Alignment:
| Q |
47 |
aataatattaccaacaacttggttgagaagtttaggagcattggcttacatatctgttggtggggtagtggcttctgttattttgattggttgtgttgtt |
146 |
Q |
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| T |
24064488 |
aataatattgccaacaacttggttgagaagtttaggagcattggcctacatatctgttggtggggtagtggcttctgttattttgattggttgtgttgtt |
24064389 |
T |
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| Q |
147 |
tgggtgggagaagttgatggtgttgggtttcatgaaagaggtaagttagtaaatttggaaggattgacaactgctatgagcctttttgctctctg |
241 |
Q |
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| T |
24064388 |
tgggtgggagaagttgatggtgtagggtttcatgaaagaggtaagttagtaaatttgggaggattgacaactgctatgagcctttttgctttctg |
24064294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 24017004 - 24016811
Alignment:
| Q |
48 |
ataatattaccaacaacttggttgagaagtttaggagcattggcttacatatctgttggtggggtagtggcttctgttattttgattggttgtgttgttt |
147 |
Q |
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| T |
24017004 |
ataatattacctacaacttggttgagaagtttaggagctttggcctacatatctgttggtggggtagtgacttctgttgttttgattggttgtgttgttt |
24016905 |
T |
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| Q |
148 |
gggtgggagaagttgatggtgttgggtttcatgaaagaggtaagttagtaaatttggaaggattgacaactgctatgagcctttttgctctctg |
241 |
Q |
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| T |
24016904 |
gggtgggagaagttgatggtgtagggtttcatgaaagaggaaagttagttaatttggaaggattgacaactgctatgagcctttttgctttctg |
24016811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 24074942 - 24074754
Alignment:
| Q |
48 |
ataatattaccaacaacttggttgagaagtttaggagcattggcttacatatctgttggtggggtagtggcttctgttattttgattggttgtgttgttt |
147 |
Q |
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| T |
24074942 |
ataatattaccatcaacttggttgagaagtttaggagctttggcttatatagctctttgtgggataatggtttctttcattttagctggttgtgttgtgt |
24074843 |
T |
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| Q |
148 |
gggtgggagaagttgatggtgttgggtttcatgaaagaggtaagttagtaaatttggaaggattgacaactgctatgagcctttttgct |
236 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||| |
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| T |
24074842 |
gggtgggagaatttgatggtgtagggtttcatgaaagaggtaagttagtaaattttggaggattgtcaactgcaatgagcctttttgct |
24074754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 24025241 - 24025137
Alignment:
| Q |
47 |
aataatattaccaacaacttggttgagaagtttaggagcattggcttacatatctgttggtggggtagtggcttctgttattttgattggttgtgttgtt |
146 |
Q |
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||||||||| | | ||||||||||||||| ||| ||||| |||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
24025241 |
aataatattgctatcaacttggttgagaattttgggagctttggtctacatatctgttggtgggatagtgacttctgttgttttgattggttgtgttgtt |
24025142 |
T |
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| Q |
147 |
tgggt |
151 |
Q |
| |
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||||| |
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| T |
24025141 |
tgggt |
24025137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 23246321 - 23246135
Alignment:
| Q |
50 |
aatattaccaacaacttggttgagaagtttaggagcattggcttacatatctgttggtggggtagtggcttctgttattttgattggttgtgttgtttgg |
149 |
Q |
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||||||||||||||| |||||||||| || ||||| | || || || ||| ||||||| ||| | ||||| || | | |||||||||||||| ||| |
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| T |
23246321 |
aatattaccaacaacatggttgagaaattatggagctctagcatatatttctattggtggagtatttacttctattgtgctaattggttgtgttgtgtgg |
23246222 |
T |
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| Q |
150 |
gtgggagaagttgatggtgttgggtttcatgaaagaggtaagttagtaaatttggaaggattgacaactgctatgagcctttttgct |
236 |
Q |
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||||| ||||||||||||||||| ||| | |||||||| || || || ||||| ||||| | ||| ||||||||||||||||| |
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| T |
23246221 |
gtgggtgaagttgatggtgttggatttaacgaaagaggaaaatttgtgaatttaagaggatcttctacttctatgagcctttttgct |
23246135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 24030415 - 24030353
Alignment:
| Q |
48 |
ataatattaccaacaacttggttgagaagtttaggagcattggcttacatatctgttggtggg |
110 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
24030415 |
ataatattgccatcaacttggttgagaagtttaggagttttggtctacatatctgttggtggg |
24030353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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