View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_high_4 (Length: 262)
Name: NF0657_high_4
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32812826 - 32812583
Alignment:
| Q |
1 |
aattttcaaagttattaacatgttttgcaaatagttgtgtttgaagtttgtggcaataaattactcctacttcttaattaaacatgataatcaaaggatc |
100 |
Q |
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| T |
32812826 |
aattttcaaagttattaacatgttttgcaaatagttgtgtttgaagtttgtggcaataaattactactacttcttaattaaaaatgataatcaaaggatc |
32812727 |
T |
|
| Q |
101 |
tattaggcaatgtgagtgttagaatagcaaatccagtttgaaaat----------aaataaacaatcgatcacagaattcagccaattgtacttatatct |
190 |
Q |
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| T |
32812726 |
tattaggcattgtgtgtgttagaatagcaaatccagttttaaaataataaaaaagaaaacaacgatcgatcacaaaattcagccaattgtacttatatct |
32812627 |
T |
|
| Q |
191 |
ctgacacttaagcgactgatgtggttttctattatgtgatagat |
234 |
Q |
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| T |
32812626 |
ctgacgcttaagcgactgatgtggttttctattatgtgatagat |
32812583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 7901247 - 7901393
Alignment:
| Q |
1 |
aattttcaaagttattaacatgttttgcaaatagttgtgtttgaagtttgtggcaataaattactcctacttcttaattaaacatgataatcaaaggatc |
100 |
Q |
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|||||||||||||||||||||| ||||||| ||| ||||||| || |||| ||||||||| || |||||| |||| || ||| | ||||||||| | |
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| T |
7901247 |
aattttcaaagttattaacatgacttgcaaagagtagtgtttgtagcttgttccaataaattgctactactt---aattgaaaatg-tgatcaaaggacc |
7901342 |
T |
|
| Q |
101 |
tattaggcaatgtgagtgttagaatagcaaatccagtttgaaaataaataaacaa |
155 |
Q |
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| T |
7901343 |
tataaggcattgtgag----agaatagcaaatccatttctaaaataagtaaacaa |
7901393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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