View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_high_5 (Length: 252)
Name: NF0657_high_5
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 50654076 - 50653846
Alignment:
| Q |
1 |
ccggaacatttagcctccttataaaaacactttaaggtggtaggttgagaaagttttacacttccgtagaagttgacaaaaaagttaatacttaaagcta |
100 |
Q |
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| T |
50654076 |
ccggaacatttagcctccttataaaaacactttaaggtggtaggttgagaaagttttacaattccgtagaagttgacaaaaaagttaatacttaaagcta |
50653977 |
T |
|
| Q |
101 |
agtaggttaagtgatgcaaagaaaacttgagggtacgaatttacttaggagtaatgtgtaatttaaccttgagcatatgtcattgttctagtatacattg |
200 |
Q |
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| T |
50653976 |
agtaggttaagtgatgcaaagaaaacttgagggtacgaatttgcttaggagtaatgtgtaatttaaccttgagcatatgtcattgttctagtatacattg |
50653877 |
T |
|
| Q |
201 |
tgtgtttgaaataaatatcattatgatgatg |
231 |
Q |
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| T |
50653876 |
tgtgtttgaaataaatatcattatgatgatg |
50653846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 50663439 - 50663382
Alignment:
| Q |
176 |
tatgtcattgttctagtatacattgtgtgtttgaaataaata---tcattatgatgat |
230 |
Q |
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| T |
50663439 |
tatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgat |
50663382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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