View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0657_low_12 (Length: 252)

Name: NF0657_low_12
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0657_low_12
NF0657_low_12
[»] chr4 (2 HSPs)
chr4 (133-252)||(7285528-7285646)
chr4 (27-109)||(7285459-7285541)
[»] chr1 (2 HSPs)
chr1 (30-90)||(16000113-16000172)
chr1 (114-147)||(16001187-16001220)
[»] chr5 (2 HSPs)
chr5 (30-90)||(6838637-6838696)
chr5 (113-147)||(6837589-6837623)
[»] chr8 (1 HSPs)
chr8 (113-147)||(306412-306446)
[»] chr7 (1 HSPs)
chr7 (113-147)||(22348261-22348295)
[»] chr3 (1 HSPs)
chr3 (113-147)||(22598821-22598855)
[»] chr6 (1 HSPs)
chr6 (28-90)||(13307696-13307757)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 7285528 - 7285646
Alignment:
Q  133 tttgacttgtttctcttttgnnnnnnncaatgaattttagaaattggacaagtcttaattggagcagaaactggtcatgttggtgttgcaccaacacccg 232  Q
    ||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7285528 tttgacttgtttctcttttgtttttt-caataaattttagaaattggacaagtcttaattggagcagaacctggtcatgttggtgttgcaccaacacccg 7285626  T
Q  233 agtcttctgtttaattccat 252  Q
    |||||||| |||||||||||    
T  7285627 agtcttctatttaattccat 7285646  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 7285459 - 7285541
Alignment:
Q  27 aaaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaattcaatgaatttgacttgtttct 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7285459 aaaatgtcaaggataacgtgtataaaaacacttttgtcttgacgtttccactaagtggaattcaatgagtttgacttgtttct 7285541  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 16000113 - 16000172
Alignment:
Q  30 atgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaattca 90  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||    
T  16000113 atgtcaaggataacatgta-aaaaacatgtttgtcttgacgtttccactaggtggaattca 16000172  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 16001187 - 16001220
Alignment:
Q  114 atttgatattgcttaattatttgacttgtttctc 147  Q
    ||||||||||||||||||||||||||||||||||    
T  16001187 atttgatattgcttaattatttgacttgtttctc 16001220  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 6838696 - 6838637
Alignment:
Q  30 atgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaattca 90  Q
    ||||||||||||||||||| |||||||  |||||||||| |||||||||| ||||||||||    
T  6838696 atgtcaaggataacatgta-aaaaacatgtttgtcttgatgtttccactaggtggaattca 6838637  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 6837623 - 6837589
Alignment:
Q  113 tatttgatattgcttaattatttgacttgtttctc 147  Q
    |||||||||||||||||||||||||||||||||||    
T  6837623 tatttgatattgcttaattatttgacttgtttctc 6837589  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 306446 - 306412
Alignment:
Q  113 tatttgatattgcttaattatttgacttgtttctc 147  Q
    |||||||||||||||||||||||||||||||||||    
T  306446 tatttgatattgcttaattatttgacttgtttctc 306412  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 22348261 - 22348295
Alignment:
Q  113 tatttgatattgcttaattatttgacttgtttctc 147  Q
    |||||||||||||||||||||||||||||||||||    
T  22348261 tatttgatattgcttaattatttgacttgtttctc 22348295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 22598821 - 22598855
Alignment:
Q  113 tatttgatattgcttaattatttgacttgtttctc 147  Q
    |||||||||||||||||||||||||||||||||||    
T  22598821 tatttgatattgcttaattatttgacttgtttctc 22598855  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 13307696 - 13307757
Alignment:
Q  28 aaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaattca 90  Q
    ||||||||||||||||||| | |||| ||| |||||||||| ||| |||||| ||||||||||    
T  13307696 aaatgtcaaggataacatgca-aaaagcacctttgtcttgatgttcccactaggtggaattca 13307757  T

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