View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_low_13 (Length: 249)
Name: NF0657_low_13
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15521076 - 15520952
Alignment:
| Q |
114 |
gatgcccctctaagtgtgagtccatgtgccaaggggctgattgcacttgactagggctggccctgttggtaatgtattttgagtaatggtgtcaaatgcg |
213 |
Q |
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| T |
15521076 |
gatgcccctctaagtgtgagtccctgtgccaaggggctggttgcacttgactagggctggccctgttggtaatgtattttgagtaatggtgtcaaatgcg |
15520977 |
T |
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| Q |
214 |
tatacgtatggtggaatattttcat |
238 |
Q |
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| T |
15520976 |
tatacgtatggtggaatattttcat |
15520952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15515721 - 15515597
Alignment:
| Q |
114 |
gatgcccctctaagtgtgagtccatgtgccaaggggctgattgcacttgactagggctggccctgttggtaatgtattttgagtaatggtgtcaaatgcg |
213 |
Q |
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| T |
15515721 |
gatgcccctttaagtgtgagtccttgtgccaaggggctggttgcacttgactaaggtcgatcgtgttggtaatgtattttgagtaatggtgtcaaaagcg |
15515622 |
T |
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| Q |
214 |
tatacgtatggtggaatattttcat |
238 |
Q |
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| T |
15515621 |
tattgatatggtggaatattttcat |
15515597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 15521173 - 15521099
Alignment:
| Q |
11 |
gacatcatcattgttgtctttcaaacatttacctgcggaacatttagtgatggattttgtccgtaggtacaagta |
85 |
Q |
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| T |
15521173 |
gacatcataattgttgtcttccaaacatttacctacggaacatttagtgacggattttgtccgtaggtacaagta |
15521099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 15515834 - 15515761
Alignment:
| Q |
11 |
gacatcatcattgttgtctttcaaacatttacctgcggaacatttagtgatggattttgtccgtaggtacaagt |
84 |
Q |
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| T |
15515834 |
gacagcataattgttgtcttccaaacatttacctacggaacatttagtgacggattttgtccgtagatacaagt |
15515761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 3519253 - 3519205
Alignment:
| Q |
114 |
gatgcccctctaagtgtgagtccatgtgccaaggggctgattgcacttg |
162 |
Q |
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| T |
3519253 |
gatgcccctctaagtgtgaggccctgtgccaaggggttggttgcacttg |
3519205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 43752031 - 43751970
Alignment:
| Q |
118 |
cccctctaagtgtgagtccatgtgccaaggggctgattgcacttgactagggctggccctgt |
179 |
Q |
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| T |
43752031 |
cccctctaagtgtgaggcactgtgccaagggccttgttgcacttggccagggctggccctgt |
43751970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 29236584 - 29236550
Alignment:
| Q |
50 |
acatttagtgatggattttgtccgtaggtacaagt |
84 |
Q |
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| T |
29236584 |
acatttagtgacggattttgtccgtaggtacaagt |
29236550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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