View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_low_14 (Length: 218)
Name: NF0657_low_14
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 47798807 - 47798979
Alignment:
| Q |
1 |
atatcttgcttcttaatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtcaactacatagatcaaaccacatcataat |
100 |
Q |
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| T |
47798807 |
atatcttgcttcttaatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtcaactacatagatcaaaccacatcataat |
47798906 |
T |
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| Q |
101 |
gttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccattt |
173 |
Q |
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| T |
47798907 |
gttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccattt |
47798979 |
T |
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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 39777284 - 39777167
Alignment:
| Q |
56 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
155 |
Q |
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| T |
39777284 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaaccaagtactaga |
39777185 |
T |
|
| Q |
156 |
aatcattactctccattt |
173 |
Q |
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| T |
39777184 |
attcattactctccattt |
39777167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 39812184 - 39812147
Alignment:
| Q |
72 |
caactacatagatcaaaccacatcataatgttctatca |
109 |
Q |
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| T |
39812184 |
caactacatggatcaaacgacatcataatgttctatca |
39812147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 7513019 - 7513063
Alignment:
| Q |
65 |
gtggagtcaactacatagatcaaaccacatcataatgttctatca |
109 |
Q |
| |
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|||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
7513019 |
gtggggtcaactacatagatcaaattacgtcataatgttctatca |
7513063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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