View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0657_low_3 (Length: 357)

Name: NF0657_low_3
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0657_low_3
NF0657_low_3
[»] chr3 (9 HSPs)
chr3 (253-357)||(31224758-31224862)
chr3 (253-357)||(31415348-31415452)
chr3 (253-357)||(15447801-15447905)
chr3 (130-188)||(31224635-31224693)
chr3 (130-188)||(15447681-15447739)
chr3 (130-188)||(11913034-11913092)
chr3 (147-188)||(6808250-6808291)
chr3 (130-188)||(1988912-1988971)
chr3 (321-357)||(20630361-20630398)
[»] chr7 (14 HSPs)
chr7 (253-357)||(36686054-36686158)
chr7 (253-357)||(30821060-30821164)
chr7 (253-357)||(38480181-38480285)
chr7 (130-188)||(30820937-30820995)
chr7 (133-188)||(36685934-36685989)
chr7 (130-188)||(11085112-11085170)
chr7 (131-188)||(15213812-15213869)
chr7 (130-188)||(11092850-11092908)
chr7 (143-188)||(9320423-9320468)
chr7 (130-188)||(15439398-15439457)
chr7 (130-188)||(37727607-37727666)
chr7 (289-357)||(8468256-8468326)
chr7 (289-357)||(14270266-14270336)
chr7 (289-357)||(45847862-45847932)
[»] chr5 (17 HSPs)
chr5 (253-357)||(12122325-12122429)
chr5 (253-357)||(17875158-17875262)
chr5 (253-357)||(21555183-21555288)
chr5 (257-357)||(21557853-21557953)
chr5 (253-357)||(30615700-30615804)
chr5 (253-357)||(31455021-31455125)
chr5 (253-357)||(31455634-31455738)
chr5 (132-188)||(31455193-31455249)
chr5 (132-188)||(31455806-31455862)
chr5 (130-188)||(21555060-21555118)
chr5 (130-188)||(21557726-21557784)
chr5 (130-188)||(12122202-12122260)
chr5 (130-188)||(30615868-30615926)
chr5 (130-188)||(36460283-36460341)
chr5 (143-188)||(24212481-24212526)
chr5 (143-188)||(35852736-35852781)
chr5 (130-188)||(5889092-5889151)
[»] chr8 (10 HSPs)
chr8 (253-357)||(21580010-21580115)
chr8 (253-357)||(29763672-29763775)
chr8 (253-357)||(41680926-41681029)
chr8 (130-188)||(21579887-21579945)
chr8 (130-188)||(29763549-29763607)
chr8 (130-188)||(42560208-42560266)
chr8 (253-346)||(22965704-22965797)
chr8 (130-188)||(18760648-18760706)
chr8 (322-357)||(27472561-27472597)
chr8 (322-357)||(38550256-38550292)
[»] scaffold1351 (2 HSPs)
scaffold1351 (253-357)||(1510-1614)
scaffold1351 (131-188)||(1679-1736)
[»] scaffold0395 (2 HSPs)
scaffold0395 (257-357)||(10839-10939)
scaffold0395 (143-188)||(11008-11053)
[»] scaffold0071 (2 HSPs)
scaffold0071 (253-357)||(14284-14388)
scaffold0071 (130-188)||(14453-14511)
[»] chr4 (6 HSPs)
chr4 (253-357)||(33186046-33186150)
chr4 (130-188)||(33186215-33186273)
chr4 (143-188)||(15880810-15880855)
chr4 (289-357)||(362075-362145)
chr4 (130-188)||(13844685-13844744)
chr4 (130-188)||(14185273-14185331)
[»] chr2 (9 HSPs)
chr2 (253-357)||(22500933-22501037)
chr2 (253-357)||(22508867-22508971)
chr2 (253-357)||(24865574-24865678)
chr2 (253-347)||(7672356-7672450)
chr2 (131-188)||(7672240-7672297)
chr2 (131-188)||(24865452-24865509)
chr2 (130-188)||(2524410-2524468)
chr2 (142-188)||(22501102-22501148)
chr2 (142-188)||(22509036-22509082)
[»] chr6 (8 HSPs)
chr6 (253-357)||(20734251-20734354)
chr6 (130-188)||(20734128-20734186)
chr6 (130-188)||(27851315-27851373)
chr6 (133-188)||(34296953-34297008)
chr6 (145-188)||(22421080-22421123)
chr6 (143-188)||(2201232-2201277)
chr6 (130-188)||(25956537-25956596)
chr6 (253-306)||(25956661-25956714)
[»] scaffold0737 (2 HSPs)
scaffold0737 (253-357)||(6482-6585)
scaffold0737 (130-188)||(6359-6417)
[»] chr1 (8 HSPs)
chr1 (253-357)||(51274392-51274496)
chr1 (132-188)||(12328538-12328594)
chr1 (143-188)||(8885510-8885555)
chr1 (151-188)||(51274290-51274327)
chr1 (289-357)||(41305818-41305888)
chr1 (130-188)||(43697519-43697578)
chr1 (253-306)||(28194489-28194542)
chr1 (133-162)||(51326969-51326998)
[»] scaffold0815 (1 HSPs)
scaffold0815 (253-335)||(450-532)
[»] scaffold0599 (2 HSPs)
scaffold0599 (130-188)||(4728-4786)
scaffold0599 (130-188)||(310-368)
[»] scaffold0810 (1 HSPs)
scaffold0810 (130-188)||(3077-3136)
[»] scaffold0116 (3 HSPs)
scaffold0116 (130-188)||(43700-43759)
scaffold0116 (130-188)||(47620-47679)
scaffold0116 (253-306)||(43824-43877)
[»] scaffold0632 (1 HSPs)
scaffold0632 (326-357)||(313-344)
[»] scaffold0371 (1 HSPs)
scaffold0371 (130-188)||(3176-3234)
[»] scaffold0004 (1 HSPs)
scaffold0004 (322-357)||(362825-362861)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 31224758 - 31224862
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
31224758 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtttaagttgttaagttgtaagatgttgatc 31224857  T
353 caaat 357  Q
    |||||    
31224858 caaat 31224862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 31415452 - 31415348
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
31415452 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 31415353  T
353 caaat 357  Q
    |||||    
31415352 caaat 31415348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 15447801 - 15447905
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||| |||||||||||||||||   | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
15447801 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 15447900  T
353 caaat 357  Q
    |||||    
15447901 caaat 15447905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 31224635 - 31224693
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31224635 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31224693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 15447681 - 15447739
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
15447681 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 15447739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 11913092 - 11913034
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
11913092 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 11913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 6808291 - 6808250
Alignment:
147 atgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||| |||||||||||||||||||||||||    
6808291 atgattaatattgatgatttactttgatgattaaatgtgaaa 6808250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 1988912 - 1988971
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || || || |||||||||||||||||||    
1988912 cagagaggatgattaagatgatttaatattgttgattcacgttgatgattaaatgtgaaa 1988971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 20630361 - 20630398
Alignment:
321 tgtttaagttgtt-aagttgtaagatgttgatccaaat 357  Q
    ||||||||||||| ||||||||||||||||||||||||    
20630361 tgtttaagttgtttaagttgtaagatgttgatccaaat 20630398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 36686054 - 36686158
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
36686054 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 36686153  T
353 caaat 357  Q
    |||||    
36686154 caaat 36686158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 30821060 - 30821164
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||| |||||||||||||||||||||||   | ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
30821060 gatggtaacttgctgcatatgtttaaatgatgttgtcttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 30821159  T
353 caaat 357  Q
    |||||    
30821160 caaat 30821164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 38480285 - 38480181
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||||||||||| |||||||||   | ||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
38480285 gatggtgacttgctgcatatatttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatatctaagttgttaagttgtaagatgttgatc 38480186  T
353 caaat 357  Q
    |||||    
38480185 caaat 38480181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 30820937 - 30820995
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30820937 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 30820995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 36685934 - 36685989
Alignment:
133 agaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36685934 agaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 36685989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 11085170 - 11085112
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
11085170 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 11085112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 15213869 - 15213812
Alignment:
131 agagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
15213869 agagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 15213812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 11092908 - 11092850
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
11092908 cagagagtgtgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 11092850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 9320423 - 9320468
Alignment:
143 taagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
9320423 taagatgattaatattgatgatttattttgatgattaaatgtgaaa 9320468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 15439457 - 15439398
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||| |||||||||||||||||||    
15439457 cagagaggatgactaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 15439398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 37727607 - 37727666
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||| |||||||||||||||||||    
37727607 cagagaggatgattaagatgatttaatattgttgctttacgttgatgattaaatgtgaaa 37727666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 8468326 - 8468256
Alignment:
289 cttgctgttgtgatgaattaataccattaaaatgtttaagttg--ttaagttgtaagatgttgatccaaat 357  Q
    ||||||| ||||||| ||||||| |||||| ||| | | ||||  ||||||||||||||||||||||||||    
8468326 cttgctgatgtgatgtattaatatcattaagatgctaatgttggtttaagttgtaagatgttgatccaaat 8468256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 14270266 - 14270336
Alignment:
289 cttgctgttgtgatgaattaataccattaaaatgtttaagttg--ttaagttgtaagatgttgatccaaat 357  Q
    ||||||| ||||||| ||||||| |||||| ||| | | ||||  ||||||||||||||||||||||||||    
14270266 cttgctgatgtgatgtattaatatcattaagatgctaatgttggtttaagttgtaagatgttgatccaaat 14270336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 45847862 - 45847932
Alignment:
289 cttgctgttgtgatgaattaataccattaaaatgtttaagttg--ttaagttgtaagatgttgatccaaat 357  Q
    ||||||| ||||||| ||||||| |||||| ||| | | ||||  ||||||||||||||||||||||||||    
45847862 cttgctgatgtgatgtattaatatcattaagatgctaatgttggtttaagttgtaagatgttgatccaaat 45847932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 12122325 - 12122429
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    ||||||||||||| ||||||||||||||||   | ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
12122325 gatggtgacttgcggcatatgtttaaatgatgatgtcttgctgttgtgatgaattaataccattgagatgtttaagttgttaagttgtaagatgttgatc 12122424  T
353 caaat 357  Q
    |||||    
12122425 caaat 12122429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 17875262 - 17875158
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||    
17875262 gatggtgacttgctgcatatgtttaaatgatattatcttgctgttgtgaagaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 17875163  T
353 caaat 357  Q
    |||||    
17875162 caaat 17875158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 21555183 - 21555288
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaatacca-ttaaaatgtttaagttgttaagttgtaagatgttgat 351  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||    
21555183 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccatttaagatgtctaagttgttaagttgtaagatgttgat 21555282  T
352 ccaaat 357  Q
    ||||||    
21555283 ccaaat 21555288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 257 - 357
Target Start/End: Original strand, 21557853 - 21557953
Alignment:
257 gtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatccaaa 356  Q
    ||||||||||||||||||||||||||   | |||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
21557853 gtgacttgctgcatatgtttaaatgatgttgtcttgctgttatgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatccaaa 21557952  T
357 t 357  Q
    |    
21557953 t 21557953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 30615804 - 30615700
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    ||||||||||||||||||||||||||| ||   | ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
30615804 gatggtgacttgctgcatatgtttaaacgatgatgtcttgctgttgcgatgaattaataccattaagatgtataagttgttaagttgtaagatgttgatc 30615705  T
353 caaat 357  Q
    |||||    
30615704 caaat 30615700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 31455125 - 31455021
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||| |||||||||||||||||   | |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
31455125 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaagtaataccattaagatgtctaagttgttaagttgtaagatgttgatc 31455026  T
353 caaat 357  Q
    |||||    
31455025 caaat 31455021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 31455738 - 31455634
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||     
31455738 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaagtaataccattaagatgtctaagttgttaagttgtaagatgttgata 31455639  T
353 caaat 357  Q
    |||||    
31455638 caaat 31455634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31455249 - 31455193
Alignment:
132 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31455249 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31455193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31455862 - 31455806
Alignment:
132 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31455862 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31455806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 21555060 - 21555118
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
21555060 cagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaa 21555118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 21557726 - 21557784
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
21557726 cagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaa 21557784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 12122202 - 12122260
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
12122202 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 12122260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 30615926 - 30615868
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||    
30615926 cagagaggatgaataagatgattaatattgataatttacttttatgattaaatgtgaaa 30615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 36460341 - 36460283
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
36460341 cagagaggatgaacaagatgattaataatgatgatttactttgatgattaaatgtgaaa 36460283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 24212526 - 24212481
Alignment:
143 taagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
24212526 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 24212481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 35852781 - 35852736
Alignment:
143 taagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
35852781 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 35852736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 5889092 - 5889151
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| || ||||||| ||||||| || ||||| |||||||||||||||||||    
5889092 cagagaggatgattatgatgatttaatattgttgatttacgttgatgattaaatgtgaaa 5889151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 21580010 - 21580115
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaatacca-ttaaaatgtttaagttgttaagttgtaagatgttgat 351  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||    
21580010 gatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccatttaagatgtctaagttgttaagttgtaagatgttgat 21580109  T
352 ccaaat 357  Q
    ||||||    
21580110 ccaaat 21580115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 29763672 - 29763775
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
29763672 gatggtga-ttgctgcatatgtttaaatgatgatgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 29763770  T
353 caaat 357  Q
    |||||    
29763771 caaat 29763775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 41680926 - 41681029
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||||||||||||||||||||    | ||||| ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
41680926 gatggtgacttgctgcatatgtttaaatggtgatgtcttgttgttgtgatgaattaataccattaagatgtc-aagttgttaagttgtaagatgttgatc 41681024  T
353 caaat 357  Q
    |||||    
41681025 caaat 41681029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 21579887 - 21579945
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
21579887 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 21579945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 29763549 - 29763607
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
29763549 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 29763607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 42560208 - 42560266
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
42560208 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 42560266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 346
Target Start/End: Complemental strand, 22965797 - 22965704
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatg 346  Q
    |||||||| ||| ||||||||||||||||    | |||||||||| |||||||| ||||| ||||| |||| |||||||||||||| |||||||    
22965797 gatggtgatttgatgcatatgtttaaatggtgttgtcttgctgttatgatgaatcaatactattaagatgtctaagttgttaagttttaagatg 22965704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 18760706 - 18760648
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||| ||||||||||||||||||||||  | ||||  | |||||||||||||||||    
18760706 cagagagtatgaataagatgattaatattgtgggtttaagtagatgattaaatgtgaaa 18760648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 27472561 - 27472597
Alignment:
322 gtttaagttgtt-aagttgtaagatgttgatccaaat 357  Q
    |||||||||||| ||||||||||||||||||||||||    
27472561 gtttaagttgtttaagttgtaagatgttgatccaaat 27472597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 38550256 - 38550292
Alignment:
322 gtttaagttgtt-aagttgtaagatgttgatccaaat 357  Q
    |||||||||||| ||||||||||||||||||||||||    
38550256 gtttaagttgtttaagttgtaagatgttgatccaaat 38550292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 1614 - 1510
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||| |||||||||||||||||   | ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
1614 gatggtgacttgatgcatatgtttaaatgatgttgtcttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 1515  T
353 caaat 357  Q
    |||||    
1514 caaat 1510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 1736 - 1679
Alignment:
131 agagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
1736 agagaggattaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 1679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 257 - 357
Target Start/End: Complemental strand, 10939 - 10839
Alignment:
257 gtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatccaaa 356  Q
    ||||||||||||||||||||||||||   | |||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
10939 gtgacttgctgcatatgtttaaatgatgttgtcttgctgttttgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatccaaa 10840  T
357 t 357  Q
    |    
10839 t 10839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 11053 - 11008
Alignment:
143 taagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||| |||||| |||||| ||||||||||||||||||    
11053 taagatgattaatgttgatgatttactatgatgattaaatgtgaaa 11008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 14388 - 14284
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||| |||||||||||||||||   | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
14388 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagattttgatc 14289  T
353 caaat 357  Q
    |||||    
14288 caaat 14284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 14511 - 14453
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
14511 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 14453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 33186150 - 33186046
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||||||||| |||||||||||   | ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
33186150 gatggtgacttgctgcatttgtttaaatgatgatgtcttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 33186051  T
353 caaat 357  Q
    |||||    
33186050 caaat 33186046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 33186273 - 33186215
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
33186273 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 33186215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 15880855 - 15880810
Alignment:
143 taagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||||    
15880855 taagatgatcaatattgatgatttactttgattattaaatgtgaaa 15880810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 362145 - 362075
Alignment:
289 cttgctgttgtgatgaattaataccattaaaatgtttaagttg--ttaagttgtaagatgttgatccaaat 357  Q
    ||||||| ||||||| ||||||| |||||| ||| | | ||||  ||||||||||||||||||||||||||    
362145 cttgctgatgtgatgtattaatatcattaagatgctaatgttggtttaagttgtaagatgttgatccaaat 362075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 13844744 - 13844685
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||  || ||||| |||||||||||||||||||    
13844744 cagagaggatgattaagatgatttaatattattgatttacgttgatgattaaatgtgaaa 13844685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 14185331 - 14185273
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||| |||||||||||||||||  ||| |||||||  |||||| ||||||||||||    
14185331 cagagagtatgaataagatgattaacgttgttgttttaagttgatggttaaatgtgaaa 14185273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 22501037 - 22500933
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||| |||||||||||||||||||||||  || ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
22501037 gatggtaacttgctgcatatgtttaaatgatgctgtcttgctattgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 22500938  T
353 caaat 357  Q
    |||||    
22500937 caaat 22500933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 22508971 - 22508867
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||| |||||||||||||||||||||||  || ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
22508971 gatggtaacttgctgcatatgtttaaatgatgctgtcttgctattgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatattgatc 22508872  T
353 caaat 357  Q
    |||||    
22508871 caaat 22508867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 24865574 - 24865678
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||| |||||||||||||||||   | ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
24865574 gatggtgacttgatgcatatgtttaaatgatgttgtcttgctattgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 24865673  T
353 caaat 357  Q
    |||||    
24865674 caaat 24865678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 7672356 - 7672450
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgt 347  Q
    |||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||    
7672356 gatggtgacttgatgcatacgtttaaatgatgctgtcttgctgttgtgatgaattaataccattaagatgtctaagttgttaagtcgtaagatgt 7672450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 7672240 - 7672297
Alignment:
131 agagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
7672240 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 7672297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 24865452 - 24865509
Alignment:
131 agagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
24865452 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 24865509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 2524410 - 2524468
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
2524410 cagagagtatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 2524468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 22501148 - 22501102
Alignment:
142 ataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
22501148 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 22501102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 22509082 - 22509036
Alignment:
142 ataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
22509082 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 22509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 20734251 - 20734354
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
20734251 gatggtgacttgctgcatatgtttaaatggtgttgtcttgctgttgtgatgaattaataccattaagatg-tcaagttgttaagttgtaagatgttgatc 20734349  T
353 caaat 357  Q
    |||||    
20734350 caaat 20734354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 20734128 - 20734186
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||    
20734128 cagagaggatgaataaaatgatttatattgatgatttactttgatgattaaatgtgaaa 20734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 27851373 - 27851315
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
27851373 cagagaggatgaataagatgatttatattgatgatttaccttgatgattaaatgtgaaa 27851315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 34296953 - 34297008
Alignment:
133 agaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
34296953 agaggatgaataagatgattaataatgatgatttactttgatgattagatgtgaaa 34297008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 22421123 - 22421080
Alignment:
145 agatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
22421123 agatgattaatattgatgatttactttgatgattaaatgtgaaa 22421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 2201277 - 2201232
Alignment:
143 taagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
2201277 taagatgattaatattgatgatttactttgatgattaaatatgaaa 2201232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 25956537 - 25956596
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||| |||||||||||||||||||    
25956537 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 25956596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 25956661 - 25956714
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaat 306  Q
    |||||| |||||||| ||||||||||||||   | |||||||||||||||||||    
25956661 gatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 25956714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 6482 - 6585
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||||||||||||||||||||    | ||||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
6482 gatggtgacttgctgcatatgtttaaatggtgttgtcttgctattgtgatgaattaataccattaagatgtc-aagttgttaagttgtaagatgttgatc 6580  T
353 caaat 357  Q
    |||||    
6581 caaat 6585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 6359 - 6417
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
6359 cagagaggatgaataagatgattaataataatgatttactttgatgattaaatgtgaaa 6417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 51274392 - 51274496
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaagttgtaagatgttgatc 352  Q
    |||||||||||| ||||||||||||||||    | | ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
51274392 gatggtgacttgatgcatatgtttaaatgtttttgttttgttgttgtgatgaattaataccattaagatgtctaagttgttaagttgtaagatgttgatc 51274491  T
353 caaat 357  Q
    |||||    
51274492 caaat 51274496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 12328538 - 12328594
Alignment:
132 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
12328538 gagaggatgaataagatgattaatattgatgatttactttgatgattaaatttgaaa 12328594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 8885555 - 8885510
Alignment:
143 taagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
8885555 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 8885510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 51274290 - 51274327
Alignment:
151 ttaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||||||||||||||||||    
51274290 ttaatattgatgatttactttgatgattaaatgtgaaa 51274327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 41305818 - 41305888
Alignment:
289 cttgctgttgtgatgaattaataccattaaaatgtttaagttg--ttaagttgtaagatgttgatccaaat 357  Q
    ||||||| ||||||| ||||||| |||||| ||| | | ||||  ||||||||||||||||||||||||||    
41305818 cttgctgatgtgatgtattaatatcattaagatgctaatgttggtttaagttgtaagatgttgatccaaat 41305888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 43697578 - 43697519
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||  |||||||||||||||||||    
43697578 cagagaggatgattaagatgatttaatattgttgatttaagttgatgattaaatgtgaaa 43697519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 28194489 - 28194542
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaat 306  Q
    |||||| |||||||| ||||||||||||||   | |||||||||||||||||||    
28194489 gatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 28194542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 51326998 - 51326969
Alignment:
133 agaggatgaataagatgattaatattgatg 162  Q
    ||||||||||||||||||||||||||||||    
51326998 agaggatgaataagatgattaatattgatg 51326969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 532 - 450
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaattaataccattaaaatgtttaagttgttaa 335  Q
    ||||||||||||||||||||||| ||||||   | |||||||||||||||||||||||| |||||| |||| |||||||||||    
532 gatggtgacttgctgcatatgttaaaatgatgttgtcttgctgttgtgatgaattaatatcattaagatgtctaagttgttaa 450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 4786 - 4728
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
4786 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 4728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 368 - 310
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
368 cagagaggatgaataagatgattaataatgatgatttactttgatgattatatgtgaaa 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 3136 - 3077
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||| |||||||||||||||||||    
3136 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 3077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 43700 - 43759
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||| |||||||||||||||||||    
43700 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 43759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 47620 - 47679
Alignment:
130 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaa 188  Q
    |||||||||||| |||||||||| ||||||| || ||||| |||||||||||||||||||    
47620 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 47679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 43824 - 43877
Alignment:
253 gatggtgacttgctgcatatgtttaaatgacactctcttgctgttgtgatgaat 306  Q
    |||||| |||||||| ||||||||||||||   | |||||||||||||||||||    
43824 gatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 43877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 357
Target Start/End: Complemental strand, 344 - 313
Alignment:
326 aagttgttaagttgtaagatgttgatccaaat 357  Q
    ||||||||||||||||||||||||||||||||    
344 aagttgttaagttgtaagatgttgatccaaat 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 3234 - 3176
Alignment:
130 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 188  Q
    ||||||| |||||||||||||||||| |||  | ||||  |||||||||||||||||||    
3234 cagagagtatgaataagatgattaatgttgtggatttaagttgatgattaaatgtgaaa 3176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 357
Target Start/End: Complemental strand, 362861 - 362825
Alignment:
322 gtttaagttgtt-aagttgtaagatgttgatccaaat 357  Q
    |||||||||||| ||||||||||||||||||||||||    
362861 gtttaagttgtttaagttgtaagatgttgatccaaat 362825  T

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