View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_low_5 (Length: 330)
Name: NF0657_low_5
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_low_5 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 137 - 330
Target Start/End: Original strand, 31052890 - 31053083
Alignment:
| Q |
137 |
tttaaatggcagatgttggttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaattagaatgtatgctagttt |
236 |
Q |
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| T |
31052890 |
tttaaatggcagatgttggttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaattagagtgtatgctagttt |
31052989 |
T |
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| Q |
237 |
ctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccattttgttcttatgaatgaattttggtcataatatctt |
330 |
Q |
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| T |
31052990 |
ctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccattttgttcttatgaatgaattttggtcataatatctt |
31053083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 155 - 330
Target Start/End: Complemental strand, 170341 - 170166
Alignment:
| Q |
155 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaattagaatgtatgctagtttctctgcaaccctttcagt |
254 |
Q |
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| T |
170341 |
gttgaagcagaatgaatcggatagctatgtgataacttgcgattgcagttagtttgttagcaattagagtgtatgctagtttctctgcaaccctttcagt |
170242 |
T |
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| Q |
255 |
tctattatatggatccagtttcatccttctctgccaccattttgttcttatgaatgaattttggtcataatatctt |
330 |
Q |
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| T |
170241 |
tctattatatggatccagtttcatccttctctgccaccattttgttcttatgaatgaactttggtcataatatctt |
170166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 5422786 - 5422726
Alignment:
| Q |
155 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagc |
215 |
Q |
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| T |
5422786 |
gttgaagcagaaggaatctgatagctatctgatagcttaaaattgcagttagtttgttagc |
5422726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 5345534 - 5345470
Alignment:
| Q |
155 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaatt |
219 |
Q |
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| T |
5345534 |
gttgaagaagaacgaatatgatagctataagatagcttactattgcagttagttcgttagcaatt |
5345470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 5363977 - 5364041
Alignment:
| Q |
155 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaatt |
219 |
Q |
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| T |
5363977 |
gttgaagaagaacgaatctgatagctatgtgatagcttaatgttgcagttagttctttagcaatt |
5364041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 5380121 - 5380171
Alignment:
| Q |
273 |
tttcatccttctctgccaccattttgttcttatgaatgaattttggtcata |
323 |
Q |
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| T |
5380121 |
tttcatccttctctgctaacatcttgttcttatgaatgaactttggtcata |
5380171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 5345344 - 5345295
Alignment:
| Q |
273 |
tttcatccttctctgccaccattttgttcttatgaatgaattttggtcat |
322 |
Q |
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| T |
5345344 |
tttcatccttctctgctaccatttatttcttatgaatgaactttggtcat |
5345295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 5364062 - 5364108
Alignment:
| Q |
217 |
attagaatgtatgctagtttctctgcaaccctttcagttctattata |
263 |
Q |
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| T |
5364062 |
attagaatgtatgaaagtttctctgctaccatttcagttctattata |
5364108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 20334756 - 20334797
Alignment:
| Q |
174 |
gatagctatgtgatagcttacgattgcagttagtttgttagc |
215 |
Q |
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| T |
20334756 |
gatagctatctgatagcttaaaattgcagttagtttgttagc |
20334797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 20334726 - 20334762
Alignment:
| Q |
155 |
gttgaagcagaacgaatcggatagctatgtgatagct |
191 |
Q |
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| T |
20334726 |
gttgaagcagaacgaatctgatagctatctgatagct |
20334762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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