View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0657_low_7 (Length: 291)
Name: NF0657_low_7
Description: NF0657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0657_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 2187537 - 2187714
Alignment:
| Q |
68 |
catttagcatacatgtttatcaaagcattagaatttttcaaatctaacgcaaacccatttaccaaaacagctccatgaacttgtttcccaagccttaacg |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2187537 |
catttagcatacatgtttatcaaagcattagaatttttcaaatctaacgcaaacccatttaccaaaacagctccatgaacttgtttcccaagccttaacg |
2187636 |
T |
|
| Q |
168 |
ccgataaaccagcacaagattttagcacaagcggcaaagtatggcaatcaaagggtttataagacaacttcatctcac |
245 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
2187637 |
ccgataaaccagcgcaagattttagcacaagcggcaaagtatggcaatcaaagggtttataagacaacctcatttcac |
2187714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 36649856 - 36649684
Alignment:
| Q |
68 |
catttagcatacatgtttatcaaagcattagaatttttcaaatctaacgcaaacccatttaccaaaacagctccatgaacttgtttcccaagccttaacg |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36649856 |
catttagcatacatgtttatcaaagcattagaatttttcaaatctaacgcaaacccatttaccaaaacagctccatgaacttgtttcccaagccttaacg |
36649757 |
T |
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| Q |
168 |
ccgataaaccagcacaagattttagcacaagcggcaaagtatggcaatcaaagggtttataagacaacttcat |
240 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36649756 |
ccgataaaccagcgcaagattttagcacaagcggcaaagtatggcaatcaaagggtttataagacaacctcat |
36649684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 36616102 - 36615925
Alignment:
| Q |
68 |
catttagcatacatgtttatcaaagcattagaatttttcaaatctaacgcaaacccatttaccaaaacagctccatgaacttgtttcccaagccttaacg |
167 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36616102 |
catttagcatacatgtttatcaaagcattagaatttttcaaatctaacgcaaacccatttaccaaaacagctccatgaacttgtttcccaagccttaacg |
36616003 |
T |
|
| Q |
168 |
ccgataaaccagcacaagattttagcacaagcggcaaagtatggcaatcaaagggtttataagacaacttcatctcac |
245 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
36616002 |
ccgataaaccagcgcaagattttagcacaagcggcaaagtgtggcaatcaaagggtttataagacaacctcatttcac |
36615925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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