View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0658-Insertion-3 (Length: 360)
Name: NF0658-Insertion-3
Description: NF0658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0658-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 41764218 - 41763972
Alignment:
| Q |
8 |
acattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttaccgcttttcttattgcagctctagcttgtagtagatcagcttcgactct |
107 |
Q |
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| T |
41764218 |
acattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttactgcttttcttattgcagctctagcttgtagtagatcagcttcgactct |
41764119 |
T |
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| Q |
108 |
gtctaagttgctgagctttcctgccaggtttggtttctgctgaaaaccataaga-tttagattcatagaagttgtgttgggtcaaaagtatatttaaatg |
206 |
Q |
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| T |
41764118 |
gtctaagttgctgagctttcctgccaggtttggtttctgctgaaaaccataagattttagattcatagaagttgtgttgggtcaaaagtatatttaaatg |
41764019 |
T |
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| Q |
207 |
tctcaaatactcatgttaaannnnnnngacttggatcattttttatt |
253 |
Q |
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| T |
41764018 |
tctcaaatattcatgttaaatttttttgacttggatcattttttatt |
41763972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 253 - 360
Target Start/End: Complemental strand, 22488596 - 22488489
Alignment:
| Q |
253 |
tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
352 |
Q |
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| T |
22488596 |
tgaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
22488497 |
T |
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| Q |
353 |
ctatgcca |
360 |
Q |
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| T |
22488496 |
ctatgcca |
22488489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 41756260 - 41756122
Alignment:
| Q |
8 |
acattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttaccgcttttcttattgcagctctagcttgtagtagatcagcttcgactct |
107 |
Q |
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| T |
41756260 |
acattggtcctgttggaacatagtctatgtcttgtgttcgattctcgtttcttgcttttcttattgcagctctagcttgtagtagaccagcttcggttct |
41756161 |
T |
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| Q |
108 |
gtctaagttgctgagctttcctgccaggtttggtttctg |
146 |
Q |
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| T |
41756160 |
gtctaagatgctgaattttcttggtaggtttggtttctg |
41756122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 254 - 360
Target Start/End: Complemental strand, 8558103 - 8557997
Alignment:
| Q |
254 |
gaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttattc |
353 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8558103 |
gaaaaatgcttgatagcacgacagaataacatgcatgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttattc |
8558004 |
T |
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| Q |
354 |
tatgcca |
360 |
Q |
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| T |
8558003 |
tatgcca |
8557997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 33508361 - 33508262
Alignment:
| Q |
253 |
tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
352 |
Q |
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|||||||||||||||||||||||| | ||| ||||||| ||||||||||||| | || || ||||||||| |||||||||||||||||||||||||| |
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| T |
33508361 |
tgaaaaatgcttgatagcacgacatagtgacaagcacgaaggcacacgacatatcttaagccgtttgatgaatcgtttttcattttattaattatttatt |
33508262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 13798515 - 13798461
Alignment:
| Q |
247 |
ttttattgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga |
301 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
13798515 |
ttttattgaaaaatgcttgatagcacgacatattaacaagcacgaaggcacacga |
13798461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 11210326 - 11210277
Alignment:
| Q |
252 |
ttgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga |
301 |
Q |
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| T |
11210326 |
ttgaaaaatgcttgatagcacgacatactaacaagcacgaaggcacacga |
11210277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 31367739 - 31367683
Alignment:
| Q |
243 |
cattttttattgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacac |
299 |
Q |
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| T |
31367739 |
catttttttatgaaaaatgcttgatagcacgacatactaacaagcacgaaggcacac |
31367683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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