View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0658_high_2 (Length: 251)
Name: NF0658_high_2
Description: NF0658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0658_high_2 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr3 (8 HSPs) |
| |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] scaffold0151 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 27877812 - 27877582
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27877812 |
acatcatcaataacgtggcggctaggattagacagggttgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaactcaacatgagagt |
27877713 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27877712 |
tatgaaatctatctactagcagctgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgatgcaatcaacaaccctttt |
27877613 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27877612 |
acaatcaagaacaaaatctacattatcaaac |
27877582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 10395358 - 10395588
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10395358 |
acatcatcaataacatgggggctaggatcagacatggctgcttgagctaactcgtgagctaccctatttgcttgcctcctgctgaacttaacataagagt |
10395457 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| ||| |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
10395458 |
tctggaatttatcaactagcagctgtttacaagcagtgctaatacatccaaactcgctactatcatctaaacttgaattgacacaatcaacaaccctttt |
10395557 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10395558 |
acaatcaagaacaaaatctacattatcaaac |
10395588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 17321986 - 17321756
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
17321986 |
acatcatcaataatatgggggctaggattagatagggctgcttgagctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagt |
17321887 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| ||||||||| | || || |||||||||||| | ||||| ||||||||||||||||| ||||||| |||||| ||||| ||||||||||| |||| |
|
|
| T |
17321886 |
tctgaaatctatccaataacaactgtttacaagcactaataatgcatccaaactcgctactgtcatctatactagaattgacacaatcaacaactttttt |
17321787 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| |
|
|
| T |
17321786 |
gcaatcaagtgcaaaatcgacattgtcaaac |
17321756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 12539227 - 12538991
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
12539227 |
acatcatcaataatatgggggctaggattagacatggctgcatcagctaactcgtgagctatcctatttgcttgcctcctgttgaactcgacatgagagt |
12539128 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtt-------------------tacaagcagtgataatacatccaaactcgctactatcatctaaactagagttga |
201 |
Q |
| |
|
||| ||||||||| |||| |||||||| |||||||||| |||||||| ||||| |||||||||||||||| |||| || | |
|
|
| T |
12539127 |
tctgaaatctatccactaacagttgtttacaccactagcaactgtttacaagcagtaataatacacccaaattcgctactatcatctaggctagcattaa |
12539028 |
T |
|
| Q |
202 |
cgcaatcaacaacccttttacaatcaagaacaaaatc |
238 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12539027 |
cacaatcaacaactcttttacaatcaagaacaaaatc |
12538991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 40610038 - 40609930
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||| || ||| ||||| |||||||||||| |
|
|
| T |
40610038 |
acatcatcaataacgtgggggttaggattagacagggctgcctgaattaactcgtaagctaccctatttacttatcttctgatgaactcaacatgagagt |
40609939 |
T |
|
| Q |
121 |
tcttaaatc |
129 |
Q |
| |
|
||| ||||| |
|
|
| T |
40609938 |
tctgaaatc |
40609930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 2114465 - 2114299
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
|||||| ||||| ||||||||||||| || |||||||||| |||||| |||||||| |||| ||| |||| | ||||| ||||| | |||||||||||| |
|
|
| T |
2114465 |
atcatctataacacgggggctaggattggatagggctgcctaagctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttc |
2114366 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatcta |
189 |
Q |
| |
|
| |||||||| |||| | |||||||||||| || ||||| |||| |||| || ||||||||| |
|
|
| T |
2114365 |
tgaaatctattaactaataagtgtttacaagcatatatgatacacccaagctcgttattatcatcta |
2114299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 3601236 - 3601355
Alignment:
| Q |
36 |
tgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatcta |
135 |
Q |
| |
|
||||| ||| ||||||| |||| || || ||||||||||||||| ||| ||| ||||||||||| ||||| | ||||||||||||| |||||||| | |
|
|
| T |
3601236 |
tggggactatgattagatagggttgtctaagctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttctgaaatctattaa |
3601335 |
T |
|
| Q |
136 |
ctagcagttgtttacaagca |
155 |
Q |
| |
|
||| | ||||||||||||| |
|
|
| T |
3601336 |
ctaataattgtttacaagca |
3601355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 32900013 - 32899784
Alignment:
| Q |
22 |
catcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagtt |
121 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| ||| |||||| ||||| ||||||||||||| |
|
|
| T |
32900013 |
catcatcaataatgtgggggctatgattagacagggctgcatgagctaactcgtgaactaccctatttgattgtctcctggtgaactcaacatgagagtt |
32899914 |
T |
|
| Q |
122 |
cttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttta |
221 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32899913 |
ctgaaatctatctactagcaactgtttacaagcagtgataatacatccaaacttgctactatcatctaaactagagttgacgcaatcaacaatcctttta |
32899814 |
T |
|
| Q |
222 |
caatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32899813 |
caatcaagaacaaaatctacattatcaaac |
32899784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 11657745 - 11657519
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
11657745 |
acatcatcaatcacatgagggctaggattagatagggctacctaagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagt |
11657646 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||| | ||||||| |||| |||||| ||||| |||||| ||||| |||| |
|
|
| T |
11657645 |
tctgaaatctatcaactagcagctgttt-caagcagtgataatacatccaaacttgatactatcttctagactagaattgacacaatcaccaaccttttt |
11657547 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatca |
248 |
Q |
| |
|
|||||| |||| |||||||||||||||| |
|
|
| T |
11657546 |
acaatcgagaataaaatctacattatca |
11657519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 13104369 - 13104600
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgctt-gcctcctgctgaacgcaacatgagag |
119 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| || ||||| ||||||||||| |
|
|
| T |
13104369 |
acatcgtcaataatatgggggctaagattagacagggctgtctgagctaactcgtgagctaccctacttgctttgcctcttgttgaactcaacatgagag |
13104468 |
T |
|
| Q |
120 |
ttcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttt |
219 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||| || ||||| |
|
|
| T |
13104469 |
ttctgaaatctatctactaccagctgtttacaagcagtgataatacatccaaactcgctactatcatctaagctagaattgtcacaaccaagaatccttt |
13104568 |
T |
|
| Q |
220 |
tacaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
||||||||| ||||||||| | ||| |||||| |
|
|
| T |
13104569 |
tacaatcaataacaaaatcgagattgtcaaac |
13104600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 27862106 - 27862301
Alignment:
| Q |
36 |
tgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatcta |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
27862106 |
tgggggctaggattagacagggctgcct-----------tgagctaccctatttatttgcctcctgttgaactcaacatgagagttctgaaatctatcct |
27862194 |
T |
|
| Q |
136 |
ctagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttacaatcaagaacaaa |
235 |
Q |
| |
|
||||||| | |||||||||||| |||||||| | ||| ||||| || ||||||| ||||| ||||||||||| |||| ||||||||| ||||| |
|
|
| T |
27862195 |
ctagcagctatttacaagcagtaataatacacctaaattcgctgct--------aactagaattgacacaatcaacaactctttgacaatcaagtacaaa |
27862286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 26951442 - 26951669
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
26951442 |
atcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttc |
26951541 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| | ||||| |||||||||||| |||||| |
|
|
| T |
26951542 |
tgaaatctatcaactagcagttgtttacaagcagtgataatacatccaaacttgctactatcttctagactataattgacacaatcaacaacctttttac |
26951641 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26951642 |
aatcaagaacaaaatctacattatcaaa |
26951669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 21276442 - 21276617
Alignment:
| Q |
75 |
tgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaact |
174 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21276442 |
tgagctatcctatttgcttgcctcttgctgaactcaacatgagagttttgaaatctatctactaacagctgtttacaagcagtgataatacatccaaact |
21276541 |
T |
|
| Q |
175 |
cgctactatcatctaaactagagttgacgcaatcaacaacccttttacaatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21276542 |
cgctactatcatctaaactagaattgacacaatcaacaacccttttacaatcaagaacaaaatctacattatcaaa |
21276617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 33324816 - 33324591
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||| |||||| ||||||| ||||||||| ||||| ||| | ||||| |
|
|
| T |
33324816 |
acatcatcaataatatggggt-taggattagacagggctacctgaactagttcgtgggctacc-tatttgcgtgcctcctgttgaactcaata--agagt |
33324721 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
| | |||||||| || ||| ||||||||||||| ||||||||| |||| || | |||||||||||||| | ||||| |||| |||||| |||| |
|
|
| T |
33324720 |
tttggaatctatcctcttgcaactgtttacaagcagcaataatacattcaaattcattgttatcatctaaactaaaattgacacaattaacaactttttt |
33324621 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |
|
|
| T |
33324620 |
acaatcaagtacaaaatcgacattatcaaa |
33324591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 23556668 - 23556615
Alignment:
| Q |
198 |
ttgacgcaatcaacaacccttttacaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
23556668 |
ttgacacaatcaacaactcttttacaatcaaatacaaaatcgacattgtcaaac |
23556615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 28589954 - 28590181
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
28589954 |
atcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttc |
28590053 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||| |||||| |
|
|
| T |
28590054 |
tgaaatctatcaactagcagctgtttacaagcagtgataatacatccaaactcgctactatcttctagactagaattgacacaatcaacaacttttttac |
28590153 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28590154 |
aatcaagaacaaaatctacattatcaaa |
28590181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 41315867 - 41316094
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||| || |||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
41315867 |
atcatcaatcacatgggggctagtattagatagggttgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttc |
41315966 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||||| |
|
|
| T |
41315967 |
tgaaatctatcaactagcagctgtttacaagtagtgataatacatccaaactcgctactatcttctagactagaattgacacaatcaacaacctttttac |
41316066 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41316067 |
aatcaagaacaaaatctacattatcaaa |
41316094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 10977866 - 10977639
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||| ||| || |||||||||||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
10977866 |
atcatcaataatatgggggctaggattagacagggctacctgagctagctcatgggctaccctatttacttgcctcatgttgaactcaacatgagagttc |
10977767 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
10977766 |
tggaatctattctctagcagttgtttacaagcagcaataatacatccaaaatcactgctatcatctaaactagaattgacacaatcaacaattattttac |
10977667 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
||||||| |||||||| ||||||||||| |
|
|
| T |
10977666 |
aatcaagtacaaaatcgacattatcaaa |
10977639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 23059341 - 23059570
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
23059341 |
acatcatcaatcacatgggggctaggattagataggactgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagt |
23059440 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||| |
|
|
| T |
23059441 |
tctgaaatctatcaactagcagctgtttacaagtagtgataatacatccaaactcgctactatcttctagactagaattgacacaatcaacaaccttttt |
23059540 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23059541 |
acaatcaagaacaaaatctacattatcaaa |
23059570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 16889252 - 16889024
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
16889252 |
acatcatcaatcacatgggagctaggattagatagggctgc-tgagctaactcgtgagctaccctatttgcttgcctccgactgaactcaacatgagagt |
16889154 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| ||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||| |||| | |||| ||||| |||||||||||| |||| |
|
|
| T |
16889153 |
tctgaaatctatcaactagcggctgtttacaaacagtgataatacatccaaactcgctactatcttctagattagaattgacacaatcaacaaccttttt |
16889054 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16889053 |
acaatcaagaacaaaatctacattatcaaa |
16889024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 37856972 - 37857104
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||||| |||||| | ||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
37856972 |
atcatcaataatatgggggttgggattaggcaggaccgcctgagctaactcgtgagctactctatttgcttgcctcctgttgaactcaacatgagagttc |
37857071 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagca |
155 |
Q |
| |
|
| ||||||||| |||||||||||||||||||| |
|
|
| T |
37857072 |
tgaaatctatcctctagcagttgtttacaagca |
37857104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 35097000 - 35096868
Alignment:
| Q |
40 |
ggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatctactag |
139 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||| ||||||||| |||| |
|
|
| T |
35097000 |
ggctaggattagatagggttgtctgagctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttctgaaatctatccactaa |
35096901 |
T |
|
| Q |
140 |
cagttgtttacaagcagtgataatacatccaaa |
172 |
Q |
| |
|
|| |||||||||||| | ||||||||| ||||| |
|
|
| T |
35096900 |
catttgtttacaagcggagataatacaaccaaa |
35096868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 6969688 - 6969552
Alignment:
| Q |
53 |
cagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatctactagcagttgtttacaa |
152 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||| ||| |||| | |||| | ||||||||||||| |||||||| | || || |||| ||||| |
|
|
| T |
6969688 |
cagggctgtctgagctaactcgtgagcgaccccatttacttacctcttattgaaatcgacatgagagttctgaaatctattttgtaacaattgtctacaa |
6969589 |
T |
|
| Q |
153 |
gcagtgataatacatccaaactcgctactatcatcta |
189 |
Q |
| |
|
|||| || ||||| |||||||| ||| ||||||||| |
|
|
| T |
6969588 |
gcagaaattatacaaccaaactcactattatcatcta |
6969552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 17283563 - 17283751
Alignment:
| Q |
63 |
tgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatctactagcagttgtttacaagcagtgataa |
162 |
Q |
| |
|
|||| ||||||||||| |||| ||| | ||||||||| ||||| | |||| |||||||| |||||||| |||| ||||||||||||||| || | |
|
|
| T |
17283563 |
tgagttaactcgtgagtcaccccattcgtttgcctcctattgaactcgacataagagttctgaaatctattgactaatagttgtttacaagcaaatatga |
17283662 |
T |
|
| Q |
163 |
tacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttacaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
|||| ||||||||| || ||| ||||| | || || || ||||||||| |||||| |||||||| |||| || |||||||||||| |
|
|
| T |
17283663 |
tacaaccaaactcgttattattatctacatgtgaattcacaagatcaacaactcttttagaatcaagagcaaagtccacattatcaaac |
17283751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 46078560 - 46078340
Alignment:
| Q |
30 |
ataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaa-t |
128 |
Q |
| |
|
||||| |||||||||||||||| |||| || || || |||||||||||| ||| |||||| ||||||| || ||| | | ||||||||||||| ||| | |
|
|
| T |
46078560 |
ataacatgggggctaggattaggtaggg-tgtctaagttaactcgtgagcgacc-tatttgtttgcctcttgttgagctcgacatgagagttctgaaaat |
46078463 |
T |
|
| Q |
129 |
ctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttacaatcaa |
228 |
Q |
| |
|
|||| ||| | | ||||||||||| |||||||| ||||||||| | ||||||||| || || || || |||||||||| |||||| |||||| |
|
|
| T |
46078462 |
ctattaactgataactatttacaagcagatataatacaaccaaactcgttgttatcatctacacgtgaattcacaaaatcaacaactcttttagaatcaa |
46078363 |
T |
|
| Q |
229 |
gaacaaaatctacattatcaaac |
251 |
Q |
| |
|
|| |||| || ||||||| |||| |
|
|
| T |
46078362 |
gatcaaagtccacattattaaac |
46078340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 9633154 - 9633058
Alignment:
| Q |
36 |
tgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctat |
132 |
Q |
| |
|
|||||||||| ||| || ||| || |||||||||||||| | | |||| ||| |||||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
9633154 |
tgggggctagtattggataggattgtctgagctaactcgtaatcgaccccattcacttgcctcctattgaactcgacatgagagttctgaaatctat |
9633058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 26730873 - 26731101
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
26730873 |
atcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgtgctaccctatttgcttgcctccggctgaactcaacatgagagttc |
26730972 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||||| |
|
|
| T |
26730973 |
tgaaatctatcaactagtagctgtttacaagtagtgataatacatccaaactcgctactatcttctagactagaattgacacaatcaacaacctttttac |
26731072 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26731073 |
aatcaagaacaaaatctacattatcaaac |
26731101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 47703737 - 47703964
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
47703737 |
atcatcaatcacatgggggctaggattatatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggcataactcaacatgagagttc |
47703836 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||||| |
|
|
| T |
47703837 |
tgaaatctatcaactagcagctgtttacaagcggtgataatacatccaaactcgctactatcttctagactagaattgacacaatcaacaacctttttac |
47703936 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47703937 |
aatcaagaacaaaatctacattatcaaa |
47703964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 1017626 - 1017855
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
1017626 |
acatcatcaatcacatgggggctaggattagatagggctgtctgagctaactcgtgagctaccctatttgcttgcctccggttgaactcaacatgagagt |
1017725 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||| |||| ||||||| |||| |
|
|
| T |
1017726 |
tctgaaatctatcaactagcatatgtttacaagcagtaataatacatccaaactcgctactatccgctagactagaattgacacaattaacaaccttttt |
1017825 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1017826 |
tcaatcaagaacaaaatctacattatcaaa |
1017855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 10346516 - 10346712
Alignment:
| Q |
54 |
agggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatctactagcagttgtttacaag |
153 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||||||| ||||| | ||||| ||||||| ||||||||| |||| || ||| ||||||| |
|
|
| T |
10346516 |
agggttgcctgagctaactcgtgagcgaccctattcgcttgcctcctgttgaactctacatgcgagttctgaaatctatccactaacatttggttacaag |
10346615 |
T |
|
| Q |
154 |
cagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttacaatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||| | | | ||||| ||||||||||| |||||||| ||||| |||| | ||||||||||| |
|
|
| T |
10346616 |
tagtaataatacatccaaattcgctactatcatctatattttaattgacacaatcaacaactcttttacagtcaagtgcaaagttcacattatcaaa |
10346712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 4525456 - 4525641
Alignment:
| Q |
41 |
gctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatctactagc |
140 |
Q |
| |
|
||||||||||||||||| || || | ||||||||||| |||| ||||||||||| |||||||| ||||||||||||||| |||| ||||||||| | |
|
|
| T |
4525456 |
gctaggattagacagggttgtctcaactaactcgtgatctac-----ttgcttgcctcttgctgaactcaacatgagagttctgaaatttatctactaac |
4525550 |
T |
|
| Q |
141 |
agttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactaga--gttgacgcaatcaacaacccttttacaatcaag |
229 |
Q |
| |
|
|| |||||||||||| | |||||||| ||||| || ||||||||||||||||| | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
4525551 |
agctgtttacaagcaataataatacacccaaattcaatactatcatctaaactatactattgacacaatcaacaacttttttacaatcaag |
4525641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 20223262 - 20223177
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaac |
107 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
20223262 |
acatcatcaataacatggggt-taggattagacagggctaccttagctaactcgtgagctatcctatttgcttgccttctgctgaac |
20223177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 20916486 - 20916418
Alignment:
| Q |
55 |
gggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttct |
123 |
Q |
| |
|
||||||| |||||||||||| |||| ||| ||| ||||||||||| ||||| |||||| |||||||| |
|
|
| T |
20916486 |
gggctgcatgagctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttct |
20916418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 20925448 - 20925380
Alignment:
| Q |
55 |
gggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttct |
123 |
Q |
| |
|
||||||| |||||||||||| |||| ||| ||| ||||||||||| ||||| |||||| |||||||| |
|
|
| T |
20925448 |
gggctgcatgagctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttct |
20925380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 30304930 - 30304703
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
30304930 |
atcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttc |
30304831 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||||| |
|
|
| T |
30304830 |
tgaaaactatcaactagcagctgtttacaagcagtgataatacatccaaactcgctactatcttctagactagaattgacacaatcaacaacctttttac |
30304731 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||| || |||||||||||||||||||| |
|
|
| T |
30304730 |
aatccagcacaaaatctacattatcaaa |
30304703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 24275353 - 24275123
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||| || |
|
|
| T |
24275353 |
acatcatcaatcacatgggggctaggattagatagggatgcctgagctaactcgtgagctaccttatttgcttgccttcgactgaactcaacatgagtgt |
24275254 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||| |
|
|
| T |
24275253 |
tctgaaatttatcaactagcagttgtttacaagcagtgataaaacatccaaactcgctactatcttctagactagaattgacacaatcaacaaccttttt |
24275154 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24275153 |
acaatcaagaacaaaatctacattatcaaac |
24275123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 24386860 - 24387090
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||| || |
|
|
| T |
24386860 |
acatcatcaatcacatgggggctaggattagatagggatgcctgagctaactcgtgagctaccttatttgcttgccttcgactgaactcaacatgagtgt |
24386959 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||| |
|
|
| T |
24386960 |
tctgaaatttatcaactagcagttgtttacaagcagtgataaaacatccaaactcgctactatcttctagactagaattgacacaatcaacaaccttttt |
24387059 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24387060 |
acaatcaagaacaaaatctacattatcaaac |
24387090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 24870541 - 24870311
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||||| ||| || |||| |||||||||||||| |||||||||||||| |||| |||||||| |||||| ||| ||||| |||| ||||||| |
|
|
| T |
24870541 |
acatcatcaataatatggaggttagggttagacagggctgcttgagctaactcgtgtgctatcctatttgtttgccttctgttgaactcaacttgagagt |
24870442 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
24870441 |
tctgaaatctatctactagcagctgtttacaagcagtgataatacattcaaactcgctactatcatctaaactagaattgacacaatcaacaaccctttt |
24870342 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||| |
|
|
| T |
24870341 |
acaatcaagagcaaaatcgacattgtcaaac |
24870311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 8703514 - 8703716
Alignment:
| Q |
41 |
gctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatctactagc |
140 |
Q |
| |
|
||||| |||||| |||| ||||||| ||||| ||| |||||||||||| ||||||||| || ||||| |||||||||||||| |||||||| |||| | |
|
|
| T |
8703514 |
gctagaattagatagggttgcctgatctaacccgtaagctaccctattcgcttgcctcgtgttgaacacaacatgagagttccgaaatctattcactatc |
8703613 |
T |
|
| Q |
141 |
agttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttacaatcaagaacaaaatcta |
240 |
Q |
| |
|
| ||||||||||||| ||| |||| ||||| ||| |||||||||| | | || ||||| | ||||||||| |||||||||||||| ||||||| | |
|
|
| T |
8703614 |
aactgtttacaagcaggaatattacacccaaattcggtactatcatcaatgtttgaattgacactatcaacaactcttttacaatcaagtgcaaaatcaa |
8703713 |
T |
|
| Q |
241 |
cat |
243 |
Q |
| |
|
||| |
|
|
| T |
8703714 |
cat |
8703716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 32620677 - 32620630
Alignment:
| Q |
52 |
acagggctgcctgagctaactcgtgagctaccctatttgcttgcctcc |
99 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32620677 |
acagggccgcgtgagctaactcgtgagcaaccctatttgcttgcctcc |
32620630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 255368 - 255594
Alignment:
| Q |
23 |
atcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttc |
122 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||| |
|
|
| T |
255368 |
atcatcaatcatatgggggctaggattagatagggctgcctgagctaacccgtgagctaccctatttgcttgcctccggctgaactcaacatgagaattc |
255467 |
T |
|
| Q |
123 |
ttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaacccttttac |
222 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||| |||||| | |
|
|
| T |
255468 |
tgaaatctatcaactagcagctgtttacaagcagtgataatacatccaaactcgctactatcttctagactagaattgacataatcaacaa-ccttttgc |
255566 |
T |
|
| Q |
223 |
aatcaagaacaaaatctacattatcaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
255567 |
aatcaagaacaaaatctacattatcaaa |
255594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 9451571 - 9451341
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||| | | |||||||| |
|
|
| T |
9451571 |
acatcatcaataatatgggggctaggattagacagggctgcctgatttaactcgtgagctaccctatttgtttgtctcctgttgaactcgatatgagagt |
9451472 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaacaaccctttt |
220 |
Q |
| |
|
||| |||||||||||| ||| |||||||||||||||| |||||||| ||||| || || ||||||||||| ||||| ||||| ||||||||||| ||||| |
|
|
| T |
9451471 |
tctgaaatctatctaccagccgttgtttacaagcagtaataatacacccaaattcacttctatcatctaagctagaattgacacaatcaacaactctttt |
9451372 |
T |
|
| Q |
221 |
acaatcaagaacaaaatctacattatcaaac |
251 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |
|
|
| T |
9451371 |
acaatcaagaacaaaatcgacattgtcaaac |
9451341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 17852455 - 17852296
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | |
|
|
| T |
17852455 |
acatcatcaatcacatgggggctaagattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagaat |
17852356 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctac |
180 |
Q |
| |
|
||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17852355 |
tctgaaatctatcaactagcagctgtttacaagcagtgataatacatccaaactcgctac |
17852296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 12129602 - 12129413
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||| ||| |
|
|
| T |
12129602 |
acatcatcaatcacatgggggctaggatcagataaggctacctgagctaactcgtgagctaccctatttgcttgccttcggctgaactcaacgtgaaagt |
12129503 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcatctaaactagagttgacgcaatcaa |
210 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||| |
|
|
| T |
12129502 |
tttgaaatctatcaactagcagttgtttacaagcagtgataatacatccaaactcgctactatcttctagactagaattgacacaatcaa |
12129413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 20492576 - 20492423
Alignment:
| Q |
36 |
tgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctatcta |
135 |
Q |
| |
|
|||||| ||| ||| || ||||||||||||||||| |||||||| |||||||| ||||||||||| | ||| | | ||||||||||| |||||||| | |
|
|
| T |
20492576 |
tgggggttagaattggatagggctgcctgagctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttctaaaatctattaa |
20492477 |
T |
|
| Q |
136 |
ctagcagttgtttacaagcagtgataatacatccaaactcgctactatcatcta |
189 |
Q |
| |
|
||| | |||||||| ||| |||||||| |||| ||||||| |||||||| |
|
|
| T |
20492476 |
ctaataaccgtttacaaacagatataatacaaccaagctcgctatcatcatcta |
20492423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 36677728 - 36677563
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
|||||||| ||||| || | |||||||||| | |||||| |||||||||| ||||| |||||||| | | |||| ||| ||||| | |||||||||| |
|
|
| T |
36677728 |
acatcatctataacatgcgagctaggattaaatagggctatatgagctaacttgtgagtgaccctattcgttcgccttctgttgaactcgacatgagagt |
36677629 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactatcat |
186 |
Q |
| |
|
| ||| |||| |||| || |||| |||| ||| || ||||| ||||||||||||||||||| |
|
|
| T |
36677628 |
gttgaaaactattaactaacaattgtctacatgcatatatgatacaaccaaactcgctactatcat |
36677563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 12980790 - 12980730
Alignment:
| Q |
72 |
tcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagttcttaaatctat |
132 |
Q |
| |
|
|||||||| |||| ||| | |||||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
12980790 |
tcgtgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttctgaaatctat |
12980730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0151 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0151
Description:
Target: scaffold0151; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 21351 - 21512
Alignment:
| Q |
21 |
acatcatcaataacgtgggggctaggattagacagggctgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaacgcaacatgagagt |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| | |||||||||| ||||||||||||||| ||||||||||| ||||| | |||||||| | |
|
|
| T |
21351 |
acatcatcaatagtatgggggctaggattagatagggctacttgagctaacttatgagctaccctatttccttgcctcctgttgaactcgacatgaga-t |
21449 |
T |
|
| Q |
121 |
tcttaaatctatctactagcagttgtttacaagcagtgataatacatccaaactcgctactat |
183 |
Q |
| |
|
||| ||||||||| | || || ||||| |||||| || ||||||||||| |||||||||| |
|
|
| T |
21450 |
tctgaaatctatccattaacaactgtttgcaagcaaaaatgatacatccaaattcgctactat |
21512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3382 times since January 2019
Visitors: 4034