View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0658_low_2 (Length: 509)

Name: NF0658_low_2
Description: NF0658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0658_low_2
NF0658_low_2
[»] chr4 (2 HSPs)
chr4 (72-257)||(54452774-54452959)
chr4 (380-413)||(54453614-54453647)
[»] chr7 (1 HSPs)
chr7 (108-179)||(28467770-28467843)
[»] chr6 (1 HSPs)
chr6 (134-179)||(7700930-7700975)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 54452774 - 54452959
Alignment:
Q  72 attagttcaaaatttcttaattttgatataaattgggtatgacttttaagaattccaattatatattttagttagtatttgtcgcaatcccaatattttg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  54452774 attagttcaaaatttcttaattttgatataaattgggtatgacttttaagaattccagttatatattttagttagtatttgtcgcaaccccaatattttg 54452873  T
Q  172 ggtaagattcgtcagtgaccatatcatgtttctatcttattgtacgtaccaaatcgactctaaaaagtgtcattattagccggata 257  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  54452874 ggtaagattcgtcaatgaccatatcatgtttctatcttattgtacataccaaatggactctaaaaagtgtctttattagccggata 54452959  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 413
Target Start/End: Original strand, 54453614 - 54453647
Alignment:
Q  380 atcgaggtaatgtcgaagagaatgaatttggtgc 413  Q
    ||||||||||||||||||||||||||||||||||    
T  54453614 atcgaggtaatgtcgaagagaatgaatttggtgc 54453647  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 28467770 - 28467843
Alignment:
Q  108 gtatgacttttaagaattccaattata-tattttagttagtatttgtcgcaat-cccaatattttgggtaagat 179  Q
    |||| ||||||| ||||| |||||||| ||||||||||| ||||||||||  | ||||||||||||| ||||||    
T  28467770 gtataacttttatgaatttcaattataatattttagttaatatttgtcgctctccccaatattttggataagat 28467843  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 7700975 - 7700930
Alignment:
Q  134 atattttagttagtatttgtcgcaatcccaatattttgggtaagat 179  Q
    |||||||||||||||||||||||   |||||||||||||| |||||    
T  7700975 atattttagttagtatttgtcgctcccccaatattttgggcaagat 7700930  T

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