View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0658_low_4 (Length: 323)

Name: NF0658_low_4
Description: NF0658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0658_low_4
NF0658_low_4
[»] chr3 (6 HSPs)
chr3 (100-296)||(11317333-11317529)
chr3 (102-296)||(15461156-15461350)
chr3 (102-296)||(11438914-11439108)
chr3 (12-105)||(11317554-11317647)
chr3 (12-104)||(11439136-11439228)
chr3 (12-98)||(15461036-15461122)
[»] chr8 (7 HSPs)
chr8 (100-293)||(27544290-27544483)
chr8 (104-296)||(27504841-27505033)
chr8 (104-296)||(27498882-27499074)
chr8 (102-296)||(27496625-27496819)
chr8 (12-105)||(27504719-27504812)
chr8 (12-103)||(27544172-27544263)
chr8 (12-105)||(27499103-27499201)
[»] scaffold0071 (2 HSPs)
scaffold0071 (102-296)||(842-1036)
scaffold0071 (12-98)||(1070-1156)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 100 - 296
Target Start/End: Complemental strand, 11317529 - 11317333
Alignment:
Q  100 cttttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11317529 cttttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaa 11317430  T
Q  200 acctaatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaatttg 296  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11317429 acctaatttttatttgaaagagcttgctgagtttttggagtgtccattctccaaagaagaagaattcaaaggtgtggttgatgatatattaaatttg 11317333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 296
Target Start/End: Original strand, 15461156 - 15461350
Alignment:
Q  102 tttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaac 201  Q
    ||||||||||||||||| ||| |||| | ||| |||||  ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |    
T  15461156 tttggacccttttgggaacatttattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgtttttgagatatgaagaaatgaaaatgaagc 15461255  T
Q  202 ctaatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaatttg 296  Q
    ||  |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||  | |||||||||||||||||||||    
T  15461256 cttgtttttatttgaaagaggttgctgagtttttggggtgtccattctccaaagaagaagaatctaaaggagtggttgatgatatattaaatttg 15461350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 296
Target Start/End: Complemental strand, 11439108 - 11438914
Alignment:
Q  102 tttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaac 201  Q
    |||||||||||||||||||||||||| |  ||||||||| |||| ||||||||  |||| ||||| |||||||||| || |||||||||||||||||| |    
T  11439108 tttggacccttttgggagcatgtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgtttttgagatttgaagaaatgaaaatgaagc 11439009  T
Q  202 ctaatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaatttg 296  Q
    || ||||| | |||||| |||||||||| ||||||| |||||| ||| | ||||| |||||||  |||||  | |||||||||||||||||||||    
T  11439008 ctgattttcatttgaaaaagcttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgatatattaaatttg 11438914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 11317647 - 11317554
Alignment:
Q  12 agagatcctaaagacaattttgtttcactttggcatttcacaaacaagcttagagcacaaagtagaggaacacttccactacaagaggcttttg 105  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11317647 agagatcctaaagacacttttgtttcactttggcatttcacaaacaaccttagagcacaaagtagaggaacacttccactacaagaggcttttg 11317554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 11439228 - 11439136
Alignment:
Q  12 agagatcctaaagacaattttgtttcactttggcatttcacaaacaagcttagagcacaaagtagaggaacacttccactacaagaggctttt 104  Q
    |||||||||||||| | ||||| |||||| ||||||||| |||||||| | ||| |||||||||| |||||||||||| || ||||| |||||    
T  11439228 agagatcctaaagatacttttgcttcactatggcatttctcaaacaaggtaagatcacaaagtagtggaacacttccattagaagagtctttt 11439136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 15461036 - 15461122
Alignment:
Q  12 agagatcctaaagacaattttgtttcactttggcatttcacaaacaagcttagagcacaaagtagaggaacacttccactacaagag 98  Q
    |||||||||||||||| ||||| |||| | |||||||||||||||||| ||||  |||||| ||||| ||| |||| |||| |||||    
T  15461036 agagatcctaaagacacttttgcttcaatgtggcatttcacaaacaagattaggccacaaaatagagaaacccttcaactagaagag 15461122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 27544290 - 27544483
Alignment:
Q  100 cttttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaa 199  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  27544290 cttttggaccgttttgggagcatgtattgggatattggaaggaaagcttggaaaggccggagaaggtgatgtttttgaaatatgaagaaatgaaaatgaa 27544389  T
Q  200 acctaatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaat 293  Q
     |||| |||||| ||||||||| ||||| | |||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  27544390 tcctagtttttatttgaaagagattgctaattttttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaat 27544483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 27504841 - 27505033
Alignment:
Q  104 tggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaacct 203  Q
    |||||| |||||||| |||||||| | ||| |||||| ||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  27504841 tggaccgttttgggatcatgtattaggatactggaaggaaagcttggaaagaccggagaaggttatgtttttgaaatatgaagaaatgaaaatgaaacct 27504940  T
Q  204 aatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaatttg 296  Q
    ||||||   ||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||| ||| | ||||||||||||||| |||||    
T  27504941 aattttgttttgaaagagattgctaagtttttggggtgtccattctccgaagaagaagaatccaatggtgtggttgatgatatattacatttg 27505033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 296
Target Start/End: Complemental strand, 27499074 - 27498882
Alignment:
Q  104 tggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaacct 203  Q
    |||||||||||||||||||||||| | |||||||||| ||| ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||    
T  27499074 tggacccttttgggagcatgtattaggatattggaaggaaaacttggaaaggccagagaaggtgatgtttataaaatttgaagaaatgaaaatgaaacct 27498975  T
Q  204 aatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaatttg 296  Q
    | |||||| |||||| || ||||||||||| |||| ||||||||||  || |||||||||| ||| ||  |  | ||||||||||||||||||    
T  27498974 agtttttatttgaaaaagattgctgagtttctgggttgtccattctttaatgaagaagaatccaagggcatgatcgatgatatattaaatttg 27498882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 296
Target Start/End: Complemental strand, 27496819 - 27496625
Alignment:
Q  102 tttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaac 201  Q
    |||||||  ||||||||||||||||| | |||||| | | |||| ||||||| |||| |||||||||||||||||||||||||||||  ||||||||| |    
T  27496819 tttggactgttttgggagcatgtattaggatattgaacggaaagtttggaaatgccagagaaggtgatgtttttgaaatatgaagaagcgaaaatgaagc 27496720  T
Q  202 ctaatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaatttg 296  Q
    ||| |||||| |||||| || |||||||||||||||| |||  ||| || |  |||||||||| ||| ||  | ||||||||| |||||||||||    
T  27496719 ctagtttttatttgaaaaagattgctgagtttttgggttgtggattttctattgaagaagaatccaacggcatggttgatgatttattaaatttg 27496625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 27504719 - 27504812
Alignment:
Q  12 agagatcctaaagacaattttgtttcactttggcatttcacaaacaagcttagagcacaaagtagaggaacacttccactacaagaggcttttg 105  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| || ||||||||||||    
T  27504719 agagatcctaaagacacttttgtttcactttggcatttctcaaacaagctaagagaacaaagtagaggaacacttccattagaagaggcttttg 27504812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 27544172 - 27544263
Alignment:
Q  12 agagatcctaaagacaattttgtttcactttggcatttcacaaacaagcttagagcacaaagtagaggaacacttccactacaagaggcttt 103  Q
    |||||||| ||||||| ||||||||| |  |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |||||    
T  27544172 agagatccaaaagacacttttgtttcgcactggcatttcacaaacaagctaagagcacaaagtagaggaccacttccattacaagaagcttt 27544263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 27499201 - 27499103
Alignment:
Q  12 agagatcctaaagacaattttgtttcacttt-----ggcatttcacaaacaagcttagagcacaaagtagaggaacacttccactacaagaggcttttg 105  Q
    ||||||||||||||||  |||||||||||||     ||||||||||||||||| | |||||||| ||||||||| |||||||| || ||||||||||||    
T  27499201 agagatcctaaagacatgtttgtttcactttactttggcatttcacaaacaaggtaagagcacagagtagaggaccacttccattagaagaggcttttg 27499103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 296
Target Start/End: Complemental strand, 1036 - 842
Alignment:
Q  102 tttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccaaagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaac 201  Q
    ||||||||||||||||| ||| |||| | ||| |||||  ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |    
T  1036 tttggacccttttgggaacatttattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgtttttgagatatgaagaaatgaaaatgaagc 937  T
Q  202 ctaatttttacttgaaagagcttgctgagtttttggggtgtccattctccaaagaagaagaattcaaaggtttagttgatgatatattaaatttg 296  Q
    ||  |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||  | |||||||||||||||||||||    
T  936 cttgtttttatttgaaagaggttgctgagtttttggggtgtccattctccaaagaagaagaatctaaaggagtggttgatgatatattaaatttg 842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 1156 - 1070
Alignment:
Q  12 agagatcctaaagacaattttgtttcactttggcatttcacaaacaagcttagagcacaaagtagaggaacacttccactacaagag 98  Q
    |||||||||||||||| ||||| |||| | |||||||||||||||||| ||||  |||||| ||||| ||| |||| |||| |||||    
T  1156 agagatcctaaagacacttttgcttcaatgtggcatttcacaaacaagattaggccacaaaatagagaaacccttcaactagaagag 1070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2817 times since January 2019
Visitors: 4016