View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0660_high_3 (Length: 251)

Name: NF0660_high_3
Description: NF0660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0660_high_3
NF0660_high_3
[»] chr5 (7 HSPs)
chr5 (90-251)||(37077427-37077587)
chr5 (3-90)||(37077626-37077713)
chr5 (10-79)||(972813-972883)
chr5 (8-53)||(7113633-7113678)
chr5 (12-50)||(2243339-2243377)
chr5 (12-50)||(41264387-41264425)
chr5 (9-50)||(973125-973166)
[»] chr1 (9 HSPs)
chr1 (9-68)||(52432656-52432716)
chr1 (9-54)||(46080981-46081026)
chr1 (9-79)||(2534436-2534507)
chr1 (21-75)||(3367746-3367801)
chr1 (11-54)||(42819631-42819674)
chr1 (28-78)||(45136757-45136808)
chr1 (9-54)||(10775173-10775218)
chr1 (10-78)||(34601630-34601699)
chr1 (10-68)||(38839682-38839739)
[»] chr2 (5 HSPs)
chr2 (10-76)||(2248957-2249024)
chr2 (9-78)||(38576957-38577027)
chr2 (10-66)||(16863453-16863510)
chr2 (9-75)||(16576236-16576303)
chr2 (10-76)||(34176630-34176697)
[»] chr6 (5 HSPs)
chr6 (14-77)||(20067902-20067966)
chr6 (8-44)||(32047194-32047230)
chr6 (15-64)||(20206481-20206531)
chr6 (15-64)||(22100504-22100554)
chr6 (8-54)||(32342610-32342656)
[»] chr3 (4 HSPs)
chr3 (12-82)||(7641829-7641900)
chr3 (10-43)||(45228345-45228378)
chr3 (12-44)||(54437657-54437689)
chr3 (10-54)||(54437816-54437860)
[»] chr8 (3 HSPs)
chr8 (9-53)||(32166655-32166699)
chr8 (9-75)||(6630559-6630626)
chr8 (10-63)||(31475039-31475092)
[»] chr4 (2 HSPs)
chr4 (10-80)||(20512848-20512919)
chr4 (9-53)||(15131595-15131639)
[»] chr7 (2 HSPs)
chr7 (9-50)||(34891547-34891588)
chr7 (10-54)||(7463858-7463902)
[»] scaffold1743 (1 HSPs)
scaffold1743 (9-77)||(770-838)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 37077587 - 37077427
Alignment:
Q  90 agaaaaaaccttcaagaacactaagaataataagactcaggtggggttccttcaaacnnnnnnnnntaataagactcacaaaaagtagagtatcgacaca 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         ||||||||||||||||||||||||||||||||||    
T  37077587 agaaaaaaccttcaagaacactaagaataataagactcaggtggggctccttcaaacaaaaaaaa-taataagactcacaaaaagtagagtatcgacaca 37077489  T
Q  190 gcttcatgtgaatgatatgtatattgaaaaaggtaaatgactttttgaaaaattctctcaca 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37077488 gcttcatgtgaatgatatgtatattgaaaaaggtagatgactttttgaaaaattctctcaca 37077427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 37077713 - 37077626
Alignment:
Q  3 tcgagtgagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatgaaaatctctttaa 90  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077713 tcgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatgaaaatctctttaa 37077626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 972883 - 972813
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 79  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||| | | ||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaa 972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 7113633 - 7113678
Alignment:
Q  8 tgagatgaagaagtttaatgttcttgagatgaaaatgataactgat 53  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  7113633 tgagatgaagaagtttaatattcttgagatgaaaatgataattgat 7113678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 2243339 - 2243377
Alignment:
Q  12 atgaagaagtttaatgttcttgagatgaaaatgataact 50  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  2243339 atgaagaagtttgatgttcttgagatgaaaatggtaact 2243377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 41264425 - 41264387
Alignment:
Q  12 atgaagaagtttaatgttcttgagatgaaaatgataact 50  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  41264425 atgaaaaagtttaatgttcttgagatgaaaatgacaact 41264387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 973166 - 973125
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataact 50  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||    
T  973166 gagatgaagaaatttaatgtttttgagataaaaatgataact 973125  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 52432716 - 52432656
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 68  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  52432716 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaagatg 52432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 46081026 - 46080981
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 54  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  46081026 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgatt 46080981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 2534436 - 2534507
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 79  Q
    ||||||||||||||| ||||| ||||||||||| || ||| | | ||||| |||||||||| ||||||||||    
T  2534436 gagatgaagaagtttgatgtttttgagatgaaagtggtaaattattttaaaaataaagatgaagaaaatgaa 2534507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 3367801 - 3367746
Alignment:
Q  21 tttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaa 75  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||    
T  3367801 tttaatattcttgagatgaaaacgataactgatcgtaagaataaagatgaagaaaa 3367746  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 42819674 - 42819631
Alignment:
Q  11 gatgaagaagtttaatgttcttgagatgaaaatgataactgatt 54  Q
    |||||| |||||| |||||||||||||||||||||||| |||||    
T  42819674 gatgaataagttttatgttcttgagatgaaaatgataattgatt 42819631  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 45136757 - 45136808
Alignment:
Q  28 ttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 78  Q
    |||||| ||||||||| |||||||||| |||||||||||||| |||||||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaatga 45136808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 10775218 - 10775173
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 54  Q
    ||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  10775218 gagatgaagaagtttgatgttcttaagatgaaaatggtaattgatt 10775173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 34601630 - 34601699
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaatga 78  Q
    ||||||| | |||| ||||| ||||||||||||| |||||| ||  |||||||||||||| |||||||||    
T  34601630 agatgaaaacgtttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatga 34601699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 38839682 - 38839739
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 68  Q
    ||||||||| |||| |||||||||||||||||||  ||||| ||| ||||||||||||||    
T  38839682 agatgaagaggtttgatgttcttgagatgaaaat--taactaattgtaagaataaagatg 38839739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 2248957 - 2249024
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 76  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  2248957 agatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaat 2249024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 38576957 - 38577027
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 78  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||| ||| |||||| ||| |||||||||    
T  38576957 gagatgaagaactttaatgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaatga 38577027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 16863510 - 16863453
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaaga 66  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  16863510 agatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga 16863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 16576303 - 16576236
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaa 75  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||| |||||| |||| || ||||||    
T  16576303 gagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaa 16576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 34176697 - 34176630
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 76  Q
    |||||||||||||| || ||||| ||||||||||| ||||||||| ||  |||||||||| |||||||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaat 34176630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 20067966 - 20067902
Alignment:
Q  14 gaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatg 77  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  20067966 gaagaagtataatgttattgagatgaaaatgataactgattctaagaataaaaatgaagaaaatg 20067902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 32047230 - 32047194
Alignment:
Q  8 tgagatgaagaagtttaatgttcttgagatgaaaatg 44  Q
    |||||||||||||||| ||||||||||||||||||||    
T  32047230 tgagatgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 20206481 - 20206531
Alignment:
Q  15 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 64  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 20206531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 22100504 - 22100554
Alignment:
Q  15 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 64  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 22100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 32342656 - 32342610
Alignment:
Q  8 tgagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 54  Q
    ||||||||| |||||| ||||| |||||||||||||||||| |||||    
T  32342656 tgagatgaaaaagtttgatgtttttgagatgaaaatgataattgatt 32342610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 7641900 - 7641829
Alignment:
Q  12 atgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaaat 82  Q
    ||||| |||||| |||||||||| || |||||||||||||| ||||||||||||| || |||||||||||||    
T  7641900 atgaaaaagtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaat 7641829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 45228345 - 45228378
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaat 43  Q
    ||||||| ||||||||||||||||||||||||||    
T  45228345 agatgaaaaagtttaatgttcttgagatgaaaat 45228378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 54437689 - 54437657
Alignment:
Q  12 atgaagaagtttaatgttcttgagatgaaaatg 44  Q
    |||||||||||||||||| ||||||||||||||    
T  54437689 atgaagaagtttaatgttattgagatgaaaatg 54437657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 54437860 - 54437816
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 54  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgatt 54437816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 32166655 - 32166699
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 53  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  32166655 gagatgaagaagtttgatgttcttgagatgaaaatgataattgat 32166699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 6630559 - 6630626
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgattt-aagaataaagatggagaaaa 75  Q
    ||||||||||| ||||||| |||| ||||||||||| ||| |||||| ||||||||||| | ||||||    
T  6630559 gagatgaagaaatttaatgatcttaagatgaaaatggtaattgatttgaagaataaagacgaagaaaa 6630626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 31475092 - 31475039
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataa 63  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||| || |||||    
T  31475092 agatgaagaagtttgatgttcttgagataaaaatagtaactgattcaaaaataa 31475039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 20512848 - 20512919
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaa 80  Q
    |||||||||||||| |||||  | |||||||||||| || ||| ||||| |||||||||| |||||||||||    
T  20512848 agatgaagaagtttgatgtttataagatgaaaatgacaattgattttaaaaataaagatgaagaaaatgaaa 20512919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 15131595 - 15131639
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 53  Q
    ||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  15131595 gagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34891588 - 34891547
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataact 50  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||    
T  34891588 gagatgaagaaatttgatgttcttgagatcaaaatgataact 34891547  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 7463902 - 7463858
Alignment:
Q  10 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 54  Q
    |||||||||||||| |||||||| | |||||||||||||| ||||    
T  7463902 agatgaagaagtttgatgttcttcaaatgaaaatgataaccgatt 7463858  T

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Target: scaffold1743 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 838 - 770
Alignment:
Q  9 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatg 77  Q
    ||||||||||||||| || | ||||| | ||||||||||| |||| ||| |||||| ||| ||||||||    
T  838 gagatgaagaagtttgatatacttgaaaggaaaatgataaatgatgtaaaaataaaaatgaagaaaatg 770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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