View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0660_low_1 (Length: 488)
Name: NF0660_low_1
Description: NF0660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0660_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 366
Target Start/End: Complemental strand, 11397621 - 11397266
Alignment:
| Q |
22 |
catcataggtagagaatcaaagaggaggtgacagccatacaaaatttggtaaaatgtactgagaaaattgatgacatgaattcaaattgtcaatgaagaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11397621 |
catcataggtagagaatcaaagaggaggtgacagccatacaaaatttggtaaaatgtactgagaaaattgatgacatgaattcaaattgtcaatgaagaa |
11397522 |
T |
|
| Q |
122 |
ttaatgcaagaactaaattttttccaaagatcc-----------aatattaagtacttatgttgattgttatagatacaacttgcataaactatttttag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11397521 |
ttaatgcaagaactaaattttttccaaagatcctgttactacctaatattaagtacttatgttgattgttatagatacaacttgcataaactattttcac |
11397422 |
T |
|
| Q |
211 |
aatgttggtcacttactctccaagtgcatttcctttgttcctttgtttacttgcattacgtcactttgaacagaatccatgatcattgcaaacctgctca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11397421 |
aatgttggtcacttactctccaagtgcatttcctttgttcctttgtttacttgcattacgtcactttgaacagaatccatgatcattgcaaacctgctca |
11397322 |
T |
|
| Q |
311 |
atgaggtttccattatgccaattctgttttcgagtccttcacttaactgatctgtg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11397321 |
atgaggtttccattatgccaattctgttttcgagtccttcacttaactgatctgtg |
11397266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 364 - 478
Target Start/End: Complemental strand, 33170044 - 33169930
Alignment:
| Q |
364 |
gtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatga |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33170044 |
gtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatga |
33169945 |
T |
|
| Q |
464 |
agtatctattttcat |
478 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33169944 |
agtatctattttcat |
33169930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 472
Target Start/End: Complemental strand, 33154322 - 33154214
Alignment:
| Q |
364 |
gtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatga |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |
|
|
| T |
33154322 |
gtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattagagcattgtctgattttgctggaggaggttcagcattgtccaatga |
33154223 |
T |
|
| Q |
464 |
agtatctat |
472 |
Q |
| |
|
|| |||||| |
|
|
| T |
33154222 |
agcatctat |
33154214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 33144574 - 33144482
Alignment:
| Q |
372 |
gttgctttagtttgtttccaacacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatgaa |
464 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
33144574 |
gttgccttagtttgtttccaacacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttcatcattgaccaatgaa |
33144482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2546 times since January 2019
Visitors: 4010