View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0660_low_4 (Length: 412)
Name: NF0660_low_4
Description: NF0660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0660_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 246 - 401
Target Start/End: Complemental strand, 8843342 - 8843187
Alignment:
| Q |
246 |
ctcaatccagattttctatatatctaattaattttccataaaaacaacaataatgattaaataaagggcgaaaaaatatgcaatagatattaatataatg |
345 |
Q |
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| T |
8843342 |
ctcaatccagattttctatatatctaattaattttccataaaaacaacaataatgattaaataaagggcgaaaaaatatgcaatagatattaatataatg |
8843243 |
T |
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| Q |
346 |
taagatttagattaacctgagtcttagcaccgcaaatgagattaacagcaacagct |
401 |
Q |
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| T |
8843242 |
taagatttagattaacctgagtcttagcaccgcaaatgagattaacagcatcagct |
8843187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 8843566 - 8843403
Alignment:
| Q |
25 |
catcaatgacacaatttgagaaaaatgacacagttgaatataatcacacatgtgtctgtgtcagacacacaccgacacatgtcaacacaccttcgatcaa |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8843566 |
catcaatgacacaatttgagaaaaatgacacagttgaatataatcacacatgtgtctgtgtcaaacacacaccgacacatgtcaacacaccttcgatcaa |
8843467 |
T |
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| Q |
125 |
aagtgtgggtgctgcacagaatgtgaat------cctatgcaattatcataacctaattagatt |
182 |
Q |
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| T |
8843466 |
aagtgtgggtgctgcacagaatgtgaatgtgaaccctatgcaattatcataacctaattagatt |
8843403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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