View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0660_low_9 (Length: 253)

Name: NF0660_low_9
Description: NF0660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0660_low_9
NF0660_low_9
[»] chr6 (11 HSPs)
chr6 (26-212)||(27851213-27851412)
chr6 (26-204)||(20734089-20734279)
chr6 (81-204)||(2201139-2201261)
chr6 (81-204)||(22420987-22421109)
chr6 (41-175)||(34296926-34297072)
chr6 (47-212)||(25956519-25956697)
chr6 (92-151)||(19399830-19399889)
chr6 (92-151)||(18927896-18927954)
chr6 (82-151)||(25956715-25956783)
chr6 (83-143)||(31630622-31630681)
chr6 (102-149)||(27851129-27851176)
[»] chr8 (15 HSPs)
chr8 (26-212)||(41680777-41680962)
chr8 (41-212)||(21579863-21580046)
chr8 (41-212)||(29763525-29763707)
chr8 (78-204)||(32807285-32807410)
chr8 (41-179)||(42560184-42560334)
chr8 (45-209)||(39833887-39834056)
chr8 (41-143)||(18760615-18760730)
chr8 (26-87)||(3273288-3273349)
chr8 (83-151)||(27472391-27472458)
chr8 (83-151)||(38550086-38550153)
chr8 (82-151)||(1327119-1327187)
chr8 (26-71)||(23450822-23450867)
chr8 (26-71)||(24495934-24495979)
chr8 (26-71)||(34301900-34301945)
chr8 (92-151)||(3273212-3273270)
[»] scaffold0737 (1 HSPs)
scaffold0737 (26-204)||(6321-6510)
[»] chr5 (15 HSPs)
chr5 (41-212)||(12122178-12122361)
chr5 (42-212)||(21557703-21557885)
chr5 (46-212)||(21555041-21555219)
chr5 (41-175)||(36460219-36460365)
chr5 (26-212)||(30615768-30615964)
chr5 (81-207)||(24212385-24212510)
chr5 (81-181)||(35852666-35852765)
chr5 (48-212)||(31455702-31455881)
chr5 (83-212)||(5889124-5889252)
chr5 (92-212)||(31455089-31455211)
chr5 (111-206)||(17875232-17875326)
chr5 (92-151)||(29915177-29915235)
chr5 (82-151)||(5889269-5889337)
chr5 (152-212)||(21741559-21741619)
chr5 (45-89)||(5889072-5889116)
[»] chr1 (14 HSPs)
chr1 (41-163)||(51326904-51327025)
chr1 (81-204)||(51274298-51274420)
chr1 (41-194)||(12328512-12328677)
chr1 (81-152)||(8885468-8885539)
chr1 (83-212)||(28194397-28194525)
chr1 (83-212)||(43697418-43697546)
chr1 (133-212)||(20636883-20636961)
chr1 (82-151)||(28194543-28194611)
chr1 (82-151)||(43543069-43543137)
chr1 (133-206)||(49261380-49261452)
chr1 (47-89)||(43697554-43697596)
chr1 (113-151)||(48301083-48301121)
chr1 (82-151)||(43697332-43697400)
chr1 (83-151)||(46382652-46382717)
[»] chr4 (16 HSPs)
chr4 (41-212)||(33186114-33186297)
chr4 (81-187)||(15880734-15880839)
chr4 (83-212)||(13844584-13844712)
chr4 (45-207)||(46642884-46643058)
chr4 (82-151)||(52873251-52873319)
chr4 (83-143)||(362213-362272)
chr4 (92-151)||(9923369-9923427)
chr4 (92-151)||(11479432-11479490)
chr4 (92-131)||(14185252-14185291)
chr4 (92-151)||(35812211-35812269)
chr4 (51-89)||(13844720-13844758)
chr4 (102-151)||(13844498-13844547)
chr4 (50-87)||(14185309-14185346)
chr4 (133-202)||(15190360-15190428)
chr4 (82-151)||(46642793-46642861)
chr4 (133-212)||(15099383-15099461)
[»] chr7 (17 HSPs)
chr7 (42-212)||(30820914-30821096)
chr7 (26-187)||(11085036-11085208)
chr7 (81-204)||(9320439-9320561)
chr7 (42-212)||(36685908-36686090)
chr7 (26-204)||(11092757-11092946)
chr7 (41-179)||(15213744-15213894)
chr7 (92-212)||(38480249-38480368)
chr7 (45-187)||(15439322-15439477)
chr7 (43-89)||(37727585-37727631)
chr7 (82-151)||(8468386-8468454)
chr7 (82-151)||(14270138-14270206)
chr7 (83-151)||(45847735-45847802)
chr7 (153-212)||(17232666-17232725)
chr7 (82-143)||(17232588-17232648)
chr7 (133-212)||(9389705-9389783)
chr7 (153-206)||(8468471-8468524)
chr7 (92-151)||(37727648-37727707)
[»] chr3 (17 HSPs)
chr3 (42-212)||(31224612-31224794)
chr3 (26-190)||(11912955-11913130)
chr3 (42-212)||(15447658-15447837)
chr3 (92-212)||(31415416-31415535)
chr3 (81-186)||(6808175-6808279)
chr3 (82-151)||(49969963-49970032)
chr3 (45-207)||(12269620-12269793)
chr3 (153-212)||(18439864-18439923)
chr3 (43-151)||(1988890-1989012)
chr3 (26-71)||(12158633-12158678)
chr3 (102-151)||(20630210-20630259)
chr3 (133-212)||(1465419-1465497)
chr3 (92-179)||(49389772-49389859)
chr3 (82-151)||(18439941-18440009)
chr3 (109-151)||(30175304-30175346)
chr3 (113-151)||(40812058-40812096)
chr3 (82-151)||(12269529-12269597)
[»] scaffold0071 (1 HSPs)
scaffold0071 (42-212)||(14352-14534)
[»] scaffold0599 (2 HSPs)
scaffold0599 (26-190)||(231-406)
scaffold0599 (81-190)||(4649-4757)
[»] scaffold1351 (1 HSPs)
scaffold1351 (81-212)||(1578-1708)
[»] chr2 (10 HSPs)
chr2 (81-212)||(24865480-24865610)
chr2 (81-212)||(22501001-22501131)
chr2 (81-212)||(22508935-22509065)
chr2 (41-152)||(2524386-2524510)
chr2 (81-212)||(7672268-7672392)
chr2 (41-151)||(6576446-6576569)
chr2 (92-151)||(24436263-24436321)
chr2 (111-179)||(22501128-22501195)
chr2 (111-179)||(22509062-22509129)
chr2 (111-151)||(24883673-24883713)
[»] scaffold0395 (1 HSPs)
scaffold0395 (93-212)||(10907-11025)
[»] scaffold0815 (1 HSPs)
scaffold0815 (96-212)||(496-611)
[»] scaffold0116 (3 HSPs)
scaffold0116 (47-212)||(43682-43860)
scaffold0116 (47-212)||(47602-47780)
scaffold0116 (82-151)||(43878-43946)
[»] scaffold0434 (1 HSPs)
scaffold0434 (79-151)||(6767-6839)
[»] scaffold0371 (2 HSPs)
scaffold0371 (26-87)||(3212-3273)
scaffold0371 (92-151)||(3136-3194)
[»] scaffold0080 (1 HSPs)
scaffold0080 (41-152)||(59263-59386)
[»] scaffold0061 (2 HSPs)
scaffold0061 (83-143)||(15439-15499)
scaffold0061 (83-143)||(24497-24557)
[»] scaffold0009 (2 HSPs)
scaffold0009 (153-205)||(85300-85352)
scaffold0009 (82-151)||(85207-85275)
[»] scaffold0100 (1 HSPs)
scaffold0100 (82-151)||(36142-36210)
[»] scaffold0810 (2 HSPs)
scaffold0810 (92-151)||(3004-3062)
scaffold0810 (45-89)||(3112-3156)
[»] scaffold0004 (1 HSPs)
scaffold0004 (82-151)||(362964-363032)
[»] scaffold0001 (1 HSPs)
scaffold0001 (92-151)||(76962-77019)
[»] scaffold1137 (1 HSPs)
scaffold1137 (133-212)||(2300-2378)
[»] scaffold0802 (1 HSPs)
scaffold0802 (92-151)||(5478-5536)
[»] scaffold0335 (1 HSPs)
scaffold0335 (92-151)||(877-935)
[»] scaffold0513 (1 HSPs)
scaffold0513 (82-151)||(10963-11031)
[»] scaffold0377 (1 HSPs)
scaffold0377 (26-64)||(16755-16793)
[»] scaffold0149 (1 HSPs)
scaffold0149 (26-71)||(36195-36240)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 27851412 - 27851213
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgatgatt-------------aaatgtgaaaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||    
T  27851412 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgatgatttaccttgatgattaaatgtgaaaat 27851313  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  27851312 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaagattattattgatggttacttgttgtgtatgtttaaatgatgttgtc 27851213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 20734089 - 20734279
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaat 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||    
T  20734089 ggggtaggaatgaaggttgttaatgattataatgaggttcagagaggatgaataaaatgatttatattgatgatttactttgatgattaaatgtgaaaat 20734188  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatg 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| ||||| ||  ||||||||||||    
T  20734189 atttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatg 20734279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 2201261 - 2201139
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  2201261 gatgatttactttgatgattaaatatgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 2201163  T
Q  181 ttacttgatgtgtatgtttaaatg 204  Q
    | ||||| ||  ||||| ||||||    
T  2201162 tgacttgctgcatatgtctaaatg 2201139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 22421109 - 22420987
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| |    
T  22421109 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatag 22421011  T
Q  181 ttacttgatgtgtatgtttaaatg 204  Q
    | ||||| ||  ||||| ||||||    
T  22421010 tgacttgttgcatatgtctaaatg 22420987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 34296926 - 34297072
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttata-------------ttgatgattaaatgtgaaaatatttatatattgtga 127  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||             |||||||||| |||||||||||||||||||||||||    
T  34296926 gttgttaatgattataatgaggttcaaagaggatgaataagatgattaataatgatgatttactttgatgattagatgtgaaaatatttatatattgtga 34297025  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattatt 175  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||    
T  34297026 aagacgttgatatgaaattgtaa-ttgttatatatgatgattattatt 34297072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 25956519 - 25956697
Alignment:
Q  47 aatgattataatgaggttcagagaggatgaataagatgattta------------ta--ttgatgattaaatgtgaaaatatttatatattgtgaaagac 132  Q
    |||||||||||||||||||||||||||||| ||||||||||||            ||  |||||||||||||||||||| || |||||| ||||||||      
T  25956519 aatgattataatgaggttcagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagtt 25956618  T
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||| | ||| || | |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  25956619 gttgatatggagttgcaaat-gttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtc 25956697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 19399889 - 19399830
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19399889 ttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 19399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 18927954 - 18927896
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  18927954 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 18927896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 25956715 - 25956783
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  25956715 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 25956783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 31630622 - 31630681
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 143  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  31630622 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaa 31630681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 27851176 - 27851129
Alignment:
Q  102 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgta 149  Q
    ||||||| |||||||||||||||||||||| | ||||||||| |||||    
T  27851176 aatgtgagaatatttatatattgtgaaagatgctgatatgaagttgta 27851129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 41680777 - 41680962
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgt 125  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41680777 ggggtaggaatggaggttgttaatgattataatgaggttcaaagaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgt 41680876  T
Q  126 gaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||  ||||||| ||||||||| |||||||||||||  ||||||||||||||| ||||| ||  |||||||||||| |||||||    
T  41680877 gaaagatattgatatcaaattgtaa-ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatggtgatgtc 41680962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 21579863 - 21580046
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatatt-------------gatgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||             ||||||||||||||||||||||||||||||||||    
T  21579863 gttgttaatgattataatgaggttcagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaaatatttatatattgtga 21579962  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    |||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||| ||  ||||||||||||||| ||||    
T  21579963 aagacgttgatatgaagttgtaa-ttgttatatatgataattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 21580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 29763525 - 29763707
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatatt-------------gatgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||             ||||||||||||||||||||||||||||||||||    
T  29763525 gttgttaatgattataatgaggttcagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaaatatttatatattgtga 29763624  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    |||||||||||||||| |||||| |||||||||||||  |||||||| |||||| | ||| ||  ||||||||||||||||||||    
T  29763625 aagacgttgatatgaagttgtaa-ttgttatatatgatgattattatcgatggtga-ttgctgcatatgtttaaatgatgatgtc 29763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 32807410 - 32807285
Alignment:
Q  78 taagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattga 177  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  32807410 taagatgattaatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattga 32807312  T
Q  178 tggttacttgatgtgtatgtttaaatg 204  Q
    |||| ||||| ||  ||||| ||||||    
T  32807311 tggtgacttgctgcatatgtctaaatg 32807285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 42560184 - 42560334
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttata-------------ttgatgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||             ||||||||||||||||||||||||||||||||||||    
T  42560184 gttgttaatgattataatgaggttcagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaaatatttatatattgtga 42560283  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 179  Q
    || |||||||||||||||||||| |||||||||||||  |||||||||||||    
T  42560284 aatacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatg 42560334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 39834056 - 39833887
Alignment:
Q  45 ttaatgattataatgaggttcagagaggatgaataa-----gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgata 139  Q
    ||||||||||||||||| | |||||||||||| | |     | |||||||  |||||||||||||||||||| || ||||||  ||||| |  |||||||    
T  39834056 ttaatgattataatgagttccagagaggatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataacgtgaatgttgttgata 39833957  T
Q  140 tgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgat 209  Q
    |||| ||| || | |||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||    
T  39833956 tgaagttgcaaatggttatatatgaagattattattgatggttactcgctgtatatgtttaaatgatgat 39833887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 18760730 - 18760615
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatatt-------------gatgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||             |||||||||||||||||| |||||||||||||||    
T  18760730 gttgttaatgattataatgaggttcagagagtatgaataagatgattaatattgtgggtttaagtagatgattaaatgtgaaaagatttatatattgtga 18760631  T
Q  128 aagacgttgatatgaa 143  Q
    |||| |||||||||||    
T  18760630 aagatgttgatatgaa 18760615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 3273349 - 3273288
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatt 87  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||||||    
T  3273349 ggggtatgaatgaaagttgttaatgattataatgaggttcagagagtatgaataagatgatt 3273288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 27472391 - 27472458
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  27472391 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 27472458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 38550086 - 38550153
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  38550086 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 38550153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 1327119 - 1327187
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||    
T  1327119 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaacgatgttgatatgaagttgtaat 1327187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 23450867 - 23450822
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagag 71  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  23450867 ggggtaggaatggaagttgttaatgattataatgaggttgagagag 23450822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 24495979 - 24495934
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagag 71  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  24495979 ggggtaggaatggaagttgttaatgattataatgaggttgagagag 24495934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 34301945 - 34301900
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagag 71  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  34301945 ggggtaggaatggaagttgttaatgattataatgaggttgagagag 34301900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 3273270 - 3273212
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  ||||||||||||||||| | |||| |||||| |||||||    
T  3273270 ttgatgattaaatgtgaaag-atttatatattgtgaaaaatgttggtatgaagttgtaat 3273212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 6321 - 6510
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttata-------------ttgatgattaaatgtgaaaat 112  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||             |||||||||||||||||||||    
T  6321 ggggtaggaa-ggaagttgttaatgattataatgaggttcagagaggatgaataagatgattaataataatgatttactttgatgattaaatgtgaaaat 6419  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatg 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| ||||| ||  ||||||||||||    
T  6420 atttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatg 6510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 12122178 - 12122361
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatatt-------------gatgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||             ||||||||||||||||||||||||||||||||||    
T  12122178 gttgttaatgattataatgaggttcagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaaatatttatatattgtga 12122277  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    |||||||||||||||| |||||| |||||||||||||  ||||||||||||||| |||||  |  ||||||||||||||||||||    
T  12122278 aagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgcggcatatgtttaaatgatgatgtc 12122361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 21557703 - 21557885
Alignment:
Q  42 ttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||             |||||||||||||||||||||||||||||||||    
T  21557703 ttgttaatgattataatgaggttcagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaaatatttatatattgtgaa 21557802  T
Q  129 agacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||||||| |||||| |||||||||||||  |||||||||||| || ||||| ||  ||||||||||||||| ||||    
T  21557803 agacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatagtgacttgctgcatatgtttaaatgatgttgtc 21557885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 21555041 - 21555219
Alignment:
Q  46 taatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtgaaagac 132  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||             |||||||||||||||||||||||||||||||||||||    
T  21555041 taatgatgataatgaggttcagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaaatatttatatattgtgaaagac 21555140  T
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| || || |||||| |||||||||||||  ||||||||||||||| ||||| ||  ||||||||||||||| ||||    
T  21555141 gttgacataaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 21555219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 36460365 - 36460219
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttata-------------ttgatgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||             ||||||||||||||||||||||||||||||||||||    
T  36460365 gttgttaatgattataatgaggttcagagaggatgaacaagatgattaataatgatgatttactttgatgattaaatgtgaaaatatttatatattgtga 36460266  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattatt 175  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||    
T  36460265 aagacgttgatatgaaattgtaa-ttgttatatatgatgattattatt 36460219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 30615964 - 30615768
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgat-------------gattaaatgtgaaaat 112  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||             ||||||||||||||||    
T  30615964 ggggtaggaatgaag-ttgttaaggattataatgaggttcagagaggatgaataagatgattaatattgataatttacttttatgattaaatgtgaaaat 30615866  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||| ||||||||||||||||||||||||||| |||||| ||||||||  |||  ||||||| ||||||| ||||| ||  |||||||||| |||||||||    
T  30615865 att-atatattgtgaaagacgttgatatgaagttgtaa-ttgttataattgatgattattaatgatggtgacttgctgcatatgtttaaacgatgatgtc 30615768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 24212510 - 24212385
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||| |||||||||    
T  24212510 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattaatattgatgg 24212412  T
Q  181 ttacttgatgtgtatgtttaaatgatg 207  Q
    | ||||| ||  ||||| |||||||||    
T  24212411 tgacttgctgcatatgtctaaatgatg 24212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 35852765 - 35852666
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||    
T  35852765 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatacgatgattattattgatgg 35852667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 31455881 - 31455702
Alignment:
Q  48 atgattataatgaggttcagagaggatgaataagatgatttatattgatg-------------attaaatgtgaaaatatttatatattgtgaaagacgt 134  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||||||| ||||    
T  31455881 atgattataatgaggttcggagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaaatatttatatattgtgaaaaacgt 31455782  T
Q  135 tgatatgaaattgtaatttgttatatatgaaa---attattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||| |||||| | |||||| |||| |   ||||||||||||||| ||||| ||  ||||||||||||||| ||||    
T  31455781 tgatatgaagttgtaa-tcgttataaatgatattgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 31455702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 5889124 - 5889252
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 182  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| |||| |||||| ||||| ||||||||||||||||    
T  5889124 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaatt-gttatacatgaagattattattgatggtt 5889222  T
Q  183 acttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| ||| ||||||||||||||| ||||    
T  5889223 acttgctgtatatgtttaaatgatgttgtc 5889252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 31455211 - 31455089
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaa---attattattgatggttacttga 188  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| | |||||| |||| |   ||||||||||||||| ||||||    
T  31455211 ttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatattaagttgtaa-tcgttataaatgatattgattattattgatggtgacttga 31455113  T
Q  189 tgtgtatgtttaaatgatgatgtc 212  Q
    ||  ||||||||||||||| ||||    
T  31455112 tgcatatgtttaaatgatgttgtc 31455089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 17875326 - 17875232
Alignment:
Q  111 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 206  Q
    ||||||||||| ||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||||||| ||||| ||  ||||||||||||||    
T  17875326 atatttatataatgataaagacgttgatatgaagttctaatt-gttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgat 17875232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 29915177 - 29915235
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  29915177 ttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 29915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 5889269 - 5889337
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  5889269 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 5889337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 21741559 - 21741619
Alignment:
Q  152 ttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    |||||||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  21741559 ttgttatacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgttgtc 21741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 5889072 - 5889116
Alignment:
Q  45 ttaatgattataatgaggttcagagaggatgaataagatgattta 89  Q
    ||||||||| |||||||||||||||||||||| || |||||||||    
T  5889072 ttaatgattctaatgaggttcagagaggatgattatgatgattta 5889116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 51327025 - 51326904
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatat 140  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  51327025 gttgttaatgattataatgaggttcaaagaggatgaataagatgattaatattgatgattaaatgtgaacatatttatatattatgaaagacgttgatat 51326926  T
Q  141 gaaattgtaatttgttatatatg 163  Q
    ||| |||||| ||||||||||||    
T  51326925 gaagttgtaa-ttgttatatatg 51326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 51274298 - 51274420
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  51274298 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 51274396  T
Q  181 ttacttgatgtgtatgtttaaatg 204  Q
    | ||||||||  ||||||||||||    
T  51274397 tgacttgatgcatatgtttaaatg 51274420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 194
Target Start/End: Original strand, 12328512 - 12328677
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtga 127  Q
    |||||||| |||||||||||||| | ||||||||||||||||||||| |||||||             ||||||||| ||||||||||||||||||||||    
T  12328512 gttgttaaagattataatgaggtgctgagaggatgaataagatgattaatattgatgatttactttgatgattaaatttgaaaatatttatatattgtga 12328611  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgta 194  Q
    ||||||||||||||||  ||||| |||||||||||||  ||||||||||||||| ||||| ||||||    
T  12328612 aagacgttgatatgaagatgtaa-ttgttatatatgatgattattattgatggtgacttgctgtgta 12328677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 8885539 - 8885468
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 152  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8885539 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 8885468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 28194397 - 28194525
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 182  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  28194397 tgatttacgttgatgattaaatgtgaaaaaatctatataatgtgaaagttgttgatatgtagttgcaaat-gttatatatgaagattattattgatggtt 28194495  T
Q  183 acttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| ||| ||||||||||||||| ||||    
T  28194496 acttgctgtatatgtttaaatgatgttgtc 28194525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 43697546 - 43697418
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 182  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| |||||||||| |||||    
T  43697546 tgatttaagttgatgattaaatgtgaaaagatctatatagtgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgttggtt 43697448  T
Q  183 acttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| ||| |||||||| |||||| ||||    
T  43697447 acttgctgtatatgtttatatgatgctgtc 43697418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 20636961 - 20636883
Alignment:
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  20636961 gttgacatgaagttgtaatt-gttatacatgaatattattattgatggttacttgctgtatatgtttaaatgatgttgtc 20636883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 28194543 - 28194611
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  28194543 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 28194611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 43543137 - 43543069
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  43543137 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 43543069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 49261452 - 49261380
Alignment:
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 206  Q
    ||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||| | | ||||||||||||||    
T  49261452 gttgatatgaagttgtaatt-gttatacatgaagattattattgatggttacttgttatatatgtttaaatgat 49261380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 43697596 - 43697554
Alignment:
Q  47 aatgattataatgaggttcagagaggatgaataagatgattta 89  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  43697596 aatgattttaatgaggttcagagaggatgattaagatgattta 43697554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 48301121 - 48301083
Alignment:
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  48301121 atttatatattgtgaaagatgttgatatgaagttgtaat 48301083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 43697400 - 43697332
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| | |||| ||||||||||||||| | ||||||||| |||||||    
T  43697400 atgatttactttgatgattaa-tgtgagattattgatatattgtgaaagatgctgatatgaagttgtaat 43697332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 46382652 - 46382717
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||  ||||||||||| ||||| ||||||||||  |||||||||| ||||||||||| |||||||    
T  46382652 tgatttactttgatgattaa-tgtgagaatatttata--ttgtgaaagatgttgatatgaagttgtaat 46382717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 33186297 - 33186114
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatatt-------------gatgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||             |||||||||||||||||||||||||||||| |||    
T  33186297 gttgttaatgattataatgaggttcagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaaatatttatatattatga 33186198  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    |||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||  | ||||||||||||||||||    
T  33186197 aagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgcatttgtttaaatgatgatgtc 33186114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 15880839 - 15880734
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  15880839 gatgatttactttgattattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 15880741  T
Q  181 ttacttg 187  Q
    | |||||    
T  15880740 tgacttg 15880734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 13844712 - 13844584
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 182  Q
    |||||||  ||||||||||||||||||||||| |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  13844712 tgatttacgttgatgattaaatgtgaaaatatctatataatgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgatggtt 13844614  T
Q  183 acttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| ||| ||||||||||||||| ||||    
T  13844613 acttgttgtatatgtttaaatgatgttgtc 13844584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 46643058 - 46642884
Alignment:
Q  45 ttaatgattataatgaggttcagagaggatgaataagatgattta-tattgatgattaaa------------tgtgaaaatatttatatattgtgaaaga 131  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||            || ||||| ||||||||||||||||||     
T  46643058 ttaatgattataatgaggttcagagaggatgactaagatgatttaatattgttgtttaaagttgatgattaatgcgaaaagatttatatattgtgaaagt 46642959  T
Q  132 cgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatg 207  Q
     ||| ||||||| |||||||| |||| ||||||| | |||||||| |||||||||| ||| |||||||||||||||    
T  46642958 tgttaatatgaagttgtaatt-gttacatatgaagaatattattggtggttacttgttgtatatgtttaaatgatg 46642884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 52873251 - 52873319
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  52873251 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 52873319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 362272 - 362213
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 143  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  362272 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagacgttgatatgaa 362213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 9923427 - 9923369
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  9923427 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 9923369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 11479432 - 11479490
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  11479432 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 11479490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 14185291 - 14185252
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaaga 131  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  14185291 ttgatggttaaatgtgaaaatatttatatattgtgaaaga 14185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 35812211 - 35812269
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||| ||  ||||||||||||||||||| ||||||||||| |||||||    
T  35812211 ttgatgattaaatgtggaag-atttatatattgtgaaagatgttgatatgaagttgtaat 35812269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 13844758 - 13844720
Alignment:
Q  51 attataatgaggttcagagaggatgaataagatgattta 89  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  13844758 attataatgaggttcagagaggatgattaagatgattta 13844720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 13844547 - 13844498
Alignment:
Q  102 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  13844547 aatgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 13844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 14185346 - 14185309
Alignment:
Q  50 gattataatgaggttcagagaggatgaataagatgatt 87  Q
    |||||||||||||||||||||| |||||||||||||||    
T  14185346 gattataatgaggttcagagagtatgaataagatgatt 14185309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 15190428 - 15190360
Alignment:
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaa 202  Q
    ||||||||||| ||| |||| |||||| ||||| ||||||| ||||||||||||| ||| ||||||||||    
T  15190428 gttgatatgaagttgaaatt-gttatacatgaagattattaatgatggttacttgctgtatatgtttaaa 15190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 46642861 - 46642793
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| || ||||||| | ||||||||||||||||||||| |||||||    
T  46642861 atgatttaatttgatgattaa-tgtgagaagatttataaactgtgaaagacgttgatatgaagttgtaat 46642793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 15099461 - 15099383
Alignment:
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||| ||| |||| |||||| || || ||||||| ||||||||||||| ||| |||||||||| |||| ||||    
T  15099461 gttgatatgaagttgaaatt-gttatacataaagattattaatgatggttacttgctgtatatgtttaaaagatgttgtc 15099383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 30820914 - 30821096
Alignment:
Q  42 ttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||             |||||||||||||||||||||||||||||||||    
T  30820914 ttgttaatgattataatgaggttcagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaaatatttatatattgtgaa 30821013  T
Q  129 agacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    | ||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||  ||||||||||||||| ||||    
T  30821014 atacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtaacttgctgcatatgtttaaatgatgttgtc 30821096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 11085208 - 11085036
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgatgatt-------------aaatgtgaaaat 112  Q
    |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||             |||||||||| |    
T  11085208 ggggtaggaatgaag-ttattaatgattataatgaggttcagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaact 11085110  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttg 187  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||    
T  11085109 atttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatggtgacttg 11085036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 9320439 - 9320561
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  9320439 gatgatttattttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 9320537  T
Q  181 ttacttgatgtgtatgtttaaatg 204  Q
    | ||||| ||  ||||| ||||||    
T  9320538 tgacttgttgcatatgtctaaatg 9320561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 36685908 - 36686090
Alignment:
Q  42 ttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtgaa 128  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||             |||||||||||||||||||||||||||||||||    
T  36685908 ttgttaatgattataatgaggttcacagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaaatatttatatattgtgaa 36686007  T
Q  129 agacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| ||||||||| || ||| |||||||||||||  ||||||||||||||| ||||| ||  ||||||||||||||| ||||    
T  36686008 agacgctgatatgaagttttaa-ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 36686090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 11092946 - 11092757
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgatgatt-------------aaatgtgaaaat 112  Q
    |||||||||||| || || |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||             ||||||||||||    
T  11092946 ggggtaggaatgaag-ttattaatgattataatgaggttcagagagtgtgaataagatgattaatattgatgatttactttgatgattaaatgtgaaaat 11092848  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatg 204  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||| ||||| ||  || |||||||||    
T  11092847 atttatatattgtgaaagatgttgatatgaaattgtaa-ttgttatatatgatgattattattgatggtgacttgttgcatacgtttaaatg 11092757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 15213894 - 15213744
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttata-------------ttgatgattaaatgtgaaaatatttatatattgtga 127  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||             ||||||||||||||||||||||||||||||||||||    
T  15213894 gttgttaatgattataatgaggtttagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaaatatttatatattgtga 15213795  T
Q  128 aagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 179  Q
    ||||| ||||||||||||||||| |||||||||||||  |||||||||||||    
T  15213794 aagacattgatatgaaattgtaa-ttgttatatatgatgattattattgatg 15213744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 38480368 - 38480249
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  38480368 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 38480270  T
Q  192 gtatgtttaaatgatgatgtc 212  Q
     ||| ||||||||||| ||||    
T  38480269 atatatttaaatgatgttgtc 38480249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 15439477 - 15439322
Alignment:
Q  45 ttaatgattataatgaggttcagagaggatgaataagatgattta------------ta--ttgatgattaaatgtgaaaatatttatatattgtgaaag 130  Q
    |||||||||||||||||||||||||||||||| ||||||||||||            ||  |||||||||||||||||||| || ||||   ||||||||    
T  15439477 ttaatgattataatgaggttcagagaggatgactaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatactatgtgaaag 15439378  T
Q  131 acgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttg 187  Q
      ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  15439377 ttgttgatatgaagttgtaatt-gttatatatgaagattattattgatggttacttg 15439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 37727585 - 37727631
Alignment:
Q  43 tgttaatgattataatgaggttcagagaggatgaataagatgattta 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  37727585 tgttaatgattataatgaggttcagagaggatgattaagatgattta 37727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 8468454 - 8468386
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  8468454 atgatttactttgatgattaa-tgtgataatatttatatattgtgaaagatgttgatatgaagttgtaat 8468386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 14270138 - 14270206
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  14270138 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 14270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 45847735 - 45847802
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  45847735 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 45847802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 17232725 - 17232666
Alignment:
Q  153 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  17232725 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgatgatgtc 17232666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 17232648 - 17232588
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 143  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  17232648 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaa 17232588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 9389705 - 9389783
Alignment:
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||| ||| |||| | |||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  9389705 gttgatatgaagttgaaatt-gatatacatgaagattattaatgatggttacttgctgtatatgtttaaatgatgttgtc 9389783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 8468524 - 8468471
Alignment:
Q  153 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 206  Q
    ||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||    
T  8468524 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgat 8468471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 37727648 - 37727707
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||| || |||||| ||||||||  || |||||||| |||||||    
T  37727648 ttgatgattaaatgtgaaaagatctatataatgtgaaagttgtagatatgaagttgtaat 37727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 31224612 - 31224794
Alignment:
Q  42 ttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||             |||||||||||||||||||||||||| ||||||    
T  31224612 ttgttaatgattataatgaggttcagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaaatatttatataatgtgaa 31224711  T
Q  129 agacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||  ||||||||||||||| ||||    
T  31224712 agacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 31224794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 11913130 - 11912955
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttata-------------ttgatgattaaatgtgaaaat 112  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |||             |||||||||||||||||||||    
T  11913130 ggggtaggaatgaag-ttgttaatgattataattaggttcagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaaat 11913032  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatg 190  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| | ||||||||    
T  11913031 atttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgttgacttgatg 11912955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 15447658 - 15447837
Alignment:
Q  42 ttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||             |||||||||||||||||||| ||||| ||||||    
T  15447658 ttgttaatgattataatgaggttcagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaaatattcatataatgtgaa 15447757  T
Q  129 agacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||||||| |||||| ||||||||||||   ||||||||||||||| ||||||||  ||||||||||||||| ||||    
T  15447758 agacgttgatatgaagttgtaa-ttgttatatatg---attattattgatggtgacttgatgcatatgtttaaatgatgttgtc 15447837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 31415535 - 31415416
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  31415535 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 31415437  T
Q  192 gtatgtttaaatgatgatgtc 212  Q
     ||||||||||||||| ||||    
T  31415436 atatgtttaaatgatgttgtc 31415416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 6808279 - 6808175
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||    
T  6808279 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatataatgattattattgatgg 6808181  T
Q  181 ttactt 186  Q
    | ||||    
T  6808180 tgactt 6808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 49969963 - 49970032
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  49969963 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 49970032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 12269793 - 12269620
Alignment:
Q  45 ttaatgattataatgaggttcagagaggatgaataagatgattta-tattgatgattaaatgtga-----------aaatatttatatattgtgaaagac 132  Q
    ||||||||| |||||||||||||||||||||| |||||||||||| ||||| || |||||  |||           ||| ||||||||||||||||||      
T  12269793 ttaatgattgtaatgaggttcagagaggatgactaagatgatttaatattgttgtttaaagttgatgattaatgaaaaagatttatatattgtgaaagtt 12269694  T
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatg 207  Q
    ||||||||||| ||||| ||| ||| ||||||| | |||||| | |||||||||| ||| |||||||||||||||    
T  12269693 gttgatatgaagttgtatttt-ttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatg 12269620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 18439864 - 18439923
Alignment:
Q  153 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  18439864 tgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtc 18439923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 1988890 - 1989012
Alignment:
Q  43 tgttaatgattataatgaggttcagagaggatgaataagatgattta-tattg-------------atgattaaatgtgaaaatatttatatattgtgaa 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||             ||||||||||||||||| || |||||| ||||||    
T  1988890 tgttaatgattataatgaggttcagagaggatgattaagatgatttaatattgttgattcacgttgatgattaaatgtgaaaagatctatataatgtgaa 1988989  T
Q  129 agacgttgatatgaaattgtaat 151  Q
    ||  ||||||||||| |||||||    
T  1988990 agttgttgatatgaagttgtaat 1989012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 12158678 - 12158633
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagag 71  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  12158678 ggggtaggaatggaagttgttaatgattataatgaggttgagagag 12158633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 20630210 - 20630259
Alignment:
Q  102 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  20630210 aatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 20630259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 1465419 - 1465497
Alignment:
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||| ||| |||| |||||| ||||| ||||||| ||||||||||||| | | ||||||||||||||| ||||    
T  1465419 gttgatatgaagttgaaatt-gttatacatgaagattattaatgatggttacttgctctatatgtttaaatgatgttgtc 1465497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 49389772 - 49389859
Alignment:
Q  92 ttgatgattaaatgtgaaaatattt--atatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 179  Q
    |||||||||||||||||||||||||  |||||||||| |||  ||||||||||| |||||| ||||||||| |||  |||||| ||||||    
T  49389772 ttgatgattaaatgtgaaaatatttagatatattgtg-aagttgttgatatgaagttgtaa-ttgttatatttgatgattattgttgatg 49389859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 18439941 - 18440009
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| ||||| |||||||||||||||| | ||||||||| |||||||    
T  18439941 atgatttactttgatgattaa-tgtgagaatatctatatattgtgaaagatgatgatatgaagttgtaat 18440009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 30175304 - 30175346
Alignment:
Q  109 aaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||    
T  30175304 aaatatttatatactgtgaaagatgttgatatgaagttgtaat 30175346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 40812096 - 40812058
Alignment:
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  40812096 atttatatattgtgaaagatgttgatatgaagttgtaat 40812058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 12269597 - 12269529
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| || ||||||| ||| |||| |||||||||||||| |||||||    
T  12269597 atgatttaagttgatgattaa-tgtgagaagatttataaattttgaaggacgttgatatgaagttgtaat 12269529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 14534 - 14352
Alignment:
Q  42 ttgttaatgattataatgaggttcagagaggatgaataagatgatttatattgatgatt-------------aaatgtgaaaatatttatatattgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||             ||||||||||||||| ||||| ||||||    
T  14534 ttgttaatgattataatgaggttcagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaaatattcatataatgtgaa 14435  T
Q  129 agacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||||||| |||||| |||||||||| ||  ||||||||||||||| ||||||||  ||||||||||||||| ||||    
T  14434 agacgttgatatgaagttgtaa-ttgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgatgttgtc 14352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 406 - 231
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatttata-------------ttgatgattaaatgtgaaaat 112  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |||             |||||||||| ||||||||||    
T  406 ggggtaggaatgaag-ttgttaatgattataattaggttcagagaggatgaataagatgattaataatgatgatttactttgatgattatatgtgaaaat 308  T
Q  113 atttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatg 190  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| | ||||||||    
T  307 atttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgttgacttgatg 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 4757 - 4649
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||     
T  4757 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgt 4659  T
Q  181 ttacttgatg 190  Q
    | ||||||||    
T  4658 tgacttgatg 4649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 1708 - 1578
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  1708 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 1610  T
Q  181 ttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    | ||||||||  ||||||||||||||| ||||    
T  1609 tgacttgatgcatatgtttaaatgatgttgtc 1578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 24865480 - 24865610
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  24865480 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 24865578  T
Q  181 ttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    | ||||||||  ||||||||||||||| ||||    
T  24865579 tgacttgatgcatatgtttaaatgatgttgtc 24865610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 22501131 - 22501001
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| |||||||||    
T  22501131 gatgatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatgg 22501033  T
Q  181 ttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    | ||||| ||  ||||||||||||||| ||||    
T  22501032 taacttgctgcatatgtttaaatgatgctgtc 22501001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 22509065 - 22508935
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| |||||||||    
T  22509065 gatgatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatgg 22508967  T
Q  181 ttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    | ||||| ||  ||||||||||||||| ||||    
T  22508966 taacttgctgcatatgtttaaatgatgctgtc 22508935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 2524386 - 2524510
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatattga-------------tgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||             ||||||||||||||||||||||||||||||||    
T  2524386 gttgttaatgattataatgaggttcagagagtatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaaatatttatatattgtga 2524485  T
Q  128 aagacgttgatatgaaattgtaatt 152  Q
    ||||||||||||| |||||||||||    
T  2524486 aagacgttgatatcaaattgtaatt 2524510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 7672268 - 7672392
Alignment:
Q  81 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 180  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||| ||  ||||||||||||||    
T  7672268 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatg-------aagttgttatataagatgattattattgatgg 7672360  T
Q  181 ttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    | ||||||||  || |||||||||||| ||||    
T  7672361 tgacttgatgcatacgtttaaatgatgctgtc 7672392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 6576569 - 6576446
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagat-------------gatttatattgatgattaaatgtgaaaatatttatatattgtga 127  Q
    |||||||||||||||||||| |||| ||||| |||||||||||             ||||||  |||||||||||| ||||||| |||||||||||||||    
T  6576569 gttgttaatgattataatgaagttcggagagtatgaataagatgattaatgttgtggatttaagttgatgattaaaagtgaaaaaatttatatattgtga 6576470  T
Q  128 aagacgttgatatgaaattgtaat 151  Q
    |||| ||||||||||| |||||||    
T  6576469 aagatgttgatatgaagttgtaat 6576446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 24436321 - 24436263
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  24436321 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaaattgtaat 24436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 22501195 - 22501128
Alignment:
Q  111 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 179  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| ||||||||    
T  22501195 atatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatg 22501128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 22509129 - 22509062
Alignment:
Q  111 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 179  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| ||||||||    
T  22509129 atatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatg 22509062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 24883713 - 24883673
Alignment:
Q  111 atatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  24883713 atatttatatattgtgaaagatgttgatatgaagttgtaat 24883673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 11025 - 10907
Alignment:
Q  93 tgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtg 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||  |||||||||||| || ||||| ||      
T  11025 tgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaatttttaa-ttgttatatatgatgattattattgattgtgacttgctgca 10927  T
Q  193 tatgtttaaatgatgatgtc 212  Q
    ||||||||||||||| ||||    
T  10926 tatgtttaaatgatgttgtc 10907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 611 - 496
Alignment:
Q  96 tgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtat 195  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||| ||||| ||  |||    
T  611 tgattaaatgagaaaatatttatatattgtgaaagacgttgatatgaaattataa-ttgttatatatgatgattattattgatggtgacttgctgcatat 513  T
Q  196 gtttaaatgatgatgtc 212  Q
    ||| |||||||| ||||    
T  512 gttaaaatgatgttgtc 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 43682 - 43860
Alignment:
Q  47 aatgattataatgaggttcagagaggatgaataagatgattta------------ta--ttgatgattaaatgtgaaaatatttatatattgtgaaagac 132  Q
    |||||||||||||||||||||||||||||| ||||||||||||            ||  |||||||||||||||||||| || |||||| ||||||||      
T  43682 aatgattataatgaggttcagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagtt 43781  T
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||| | ||| || | |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  43782 gttgatatggagttgcaaat-gttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtc 43860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 47602 - 47780
Alignment:
Q  47 aatgattataatgaggttcagagaggatgaataagatgattta------------ta--ttgatgattaaatgtgaaaatatttatatattgtgaaagac 132  Q
    |||||||||||||||||||||||||||||| ||||||||||||            ||  |||||||||||||||||||| || |||||| ||||||||      
T  47602 aatgattataatgaggttcagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagtt 47701  T
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||| | ||| || | |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  47702 gttgatatgtagttgcaaat-gttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtc 47780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 43878 - 43946
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  43878 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 43946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 6767 - 6839
Alignment:
Q  79 aagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  6767 aagatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatggagttgtaat 6839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 3273 - 3212
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagaggatgaataagatgatt 87  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  3273 ggggttggaatggaagttgttaatgattataatgaggttcagagagtatgaataagatgatt 3212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 3194 - 3136
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  |||||||||| |||||| | ||||||||||| |||||||    
T  3194 ttgatgattaaatgtgaaag-atttatatatcgtgaaaaatgttgatatgaagttgtaat 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 59263 - 59386
Alignment:
Q  41 gttgttaatgattataatgaggttcagagaggatgaataagatgatttatattg-------------atgattaaatgtgaaaatatttatatattgtga 127  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| || |||             ||||||||||||||||  |||||||||||||||    
T  59263 gttgttaatgattataatgaggttcagagtgtatgaataagatgattaatgttgtggatttaagttgatgattaaatgtgaaag-atttatatattgtga 59361  T
Q  128 aagacgttgatatgaaattgtaatt 152  Q
    |||| ||||||||||| ||||||||    
T  59362 aagatgttgatatgaagttgtaatt 59386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 15439 - 15499
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 143  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  15439 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaa 15499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 24497 - 24557
Alignment:
Q  83 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 143  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24497 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaa 24557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 85352 - 85300
Alignment:
Q  153 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatga 205  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  85352 tgttatatatgaagattattattgatggttacttgatgtatatgtttaaatga 85300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 85275 - 85207
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  85275 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 85207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 36142 - 36210
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  36142 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 36210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 3062 - 3004
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  3062 ttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 3004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 3156 - 3112
Alignment:
Q  45 ttaatgattataatgaggttcagagaggatgaataagatgattta 89  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||    
T  3156 ttaatgattataacgaggttcagagaggatgattaagatgattta 3112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 363032 - 362964
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  363032 atgatttactttgatgattaa-tgtgagaatatttatatattttgaaagatgttgatatgaagttgtaat 362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 77019 - 76962
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||||  ||||||||||||||||| || |||||||| |||||||    
T  77019 ttgatgattaaatgtgaaaat--ttatatattgtgaaagatgtggatatgaagttgtaat 76962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 2300 - 2378
Alignment:
Q  133 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 212  Q
    ||||||||||| ||| |||| ||| || ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  2300 gttgatatgaagttgaaatt-gttgtacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgctgtc 2378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 5478 - 5536
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||||||||| |||||||    
T  5478 ttgatgattaaatgtgaaag-atttatatattgtgaaaggtgttgatatgaagttgtaat 5536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 935 - 877
Alignment:
Q  92 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    |||||||||||||||||||  ||| ||||||||||||||| ||||||||||| |||||||    
T  935 ttgatgattaaatgtgaaag-attaatatattgtgaaagatgttgatatgaagttgtaat 877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 10963 - 11031
Alignment:
Q  82 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 151  Q
    ||||||||  ||||||||| | ||||| |||||||||||||||| ||||| ||||||||||| |||||||    
T  10963 atgatttactttgatgattta-tgtgagaatatttatatattgtaaaagatgttgatatgaagttgtaat 11031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 16755 - 16793
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggtt 64  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  16755 ggggtaggaatgaaagttgttaatgattataatgaggtt 16793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 36195 - 36240
Alignment:
Q  26 ggggtaggaatggaggttgttaatgattataatgaggttcagagag 71  Q
    ||||||||||| || |||||||||||||||||| ||||| ||||||    
T  36195 ggggtaggaatagaagttgttaatgattataataaggttgagagag 36240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2641 times since January 2019
Visitors: 4010