View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0661_high_1 (Length: 622)
Name: NF0661_high_1
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_high_1 |
 | |
|
| [»] scaffold0341 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 30 - 553
Target Start/End: Complemental strand, 12118 - 11595
Alignment:
| Q |
30 |
gagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaagagtagtatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12118 |
gagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaagagtagtatt |
12019 |
T |
|
| Q |
130 |
tgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12018 |
tgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaat |
11919 |
T |
|
| Q |
230 |
actaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11918 |
actaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgtt |
11819 |
T |
|
| Q |
330 |
actctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11818 |
actctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacgggg |
11719 |
T |
|
| Q |
430 |
cttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaatacca |
529 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11718 |
cctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaatacca |
11619 |
T |
|
| Q |
530 |
gaccagattgtaattaaatagtgg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11618 |
gaccagattgtaattaaatagtgg |
11595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 93 - 553
Target Start/End: Complemental strand, 4399 - 3939
Alignment:
| Q |
93 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
192 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4399 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
4300 |
T |
|
| Q |
193 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
292 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4299 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
4200 |
T |
|
| Q |
293 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4199 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
4100 |
T |
|
| Q |
393 |
ccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacc |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4099 |
ccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacc |
4000 |
T |
|
| Q |
493 |
cataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3999 |
cataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
3939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 4493 - 4452
Alignment:
| Q |
30 |
gagaatacagaatatctctcaagctttgtaagtcatactttt |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4493 |
gagaatacagaatatctctcaagctttgtaagtcataatttt |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 30 - 553
Target Start/End: Complemental strand, 6510438 - 6509915
Alignment:
| Q |
30 |
gagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaagagtagtatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510438 |
gagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaagagtagtatt |
6510339 |
T |
|
| Q |
130 |
tgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
6510338 |
tgcatttgggtaaatttgtgcaggcatggagaaattggattgatggtactgcaacaattatcatagattctactttaaacaatgattcacgaaatgaaat |
6510239 |
T |
|
| Q |
230 |
actaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgtt |
329 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510238 |
ttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgtt |
6510139 |
T |
|
| Q |
330 |
actctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6510138 |
actctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacgggg |
6510039 |
T |
|
| Q |
430 |
cttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaatacca |
529 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510038 |
cctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaatacca |
6509939 |
T |
|
| Q |
530 |
gaccagattgtaattaaatagtgg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6509938 |
gaccagattgtaattaaatagtgg |
6509915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 126 - 368
Target Start/End: Complemental strand, 6497356 - 6497114
Alignment:
| Q |
126 |
tatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatg |
225 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||| ||||||||| | | |||||||||||||||||||||| |
|
|
| T |
6497356 |
tatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgcaacaagtatcatagatcccacgttaaacaatgattcacgaaatg |
6497257 |
T |
|
| Q |
226 |
aaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattc |
325 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
6497256 |
aaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctactgtagtagtgatgctaaatagtgattc |
6497157 |
T |
|
| Q |
326 |
tgttactctcccaatgcctttggaacctgcatttcatatggat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497156 |
agttactctcccaatgcctttggaacctgcatttcatatggat |
6497114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 93 - 346
Target Start/End: Complemental strand, 6502721 - 6502468
Alignment:
| Q |
93 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
192 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6502721 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
6502622 |
T |
|
| Q |
193 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
292 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||| ||| |
|
|
| T |
6502621 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccat |
6502522 |
T |
|
| Q |
293 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgccttt |
346 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
6502521 |
ggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgccttt |
6502468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 142 - 364
Target Start/End: Complemental strand, 6514690 - 6514468
Alignment:
| Q |
142 |
aatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtat |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||| |||| |||||| ||| | |||||||| |
|
|
| T |
6514690 |
aatttgtgtaggcatggagaaattggaaggaggggactgcagcaaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtat |
6514591 |
T |
|
| Q |
242 |
ccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
6514590 |
ccatattggattactttgtgttcaagagaatgtagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaatt |
6514491 |
T |
|
| Q |
342 |
cctttggaacctgcatttcatat |
364 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
6514490 |
cctttgcaacctgcatttcatat |
6514468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 203 - 335
Target Start/End: Original strand, 6525879 - 6526011
Alignment:
| Q |
203 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
302 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| || |
|
|
| T |
6525879 |
attaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctatt |
6525978 |
T |
|
| Q |
303 |
gtagtgatgcttaatagtgattctgttactctc |
335 |
Q |
| |
|
||| | |||||||||||| ||||| | |||||| |
|
|
| T |
6525979 |
gtactaatgcttaatagtcattctctcactctc |
6526011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 47771525 - 47771667
Alignment:
| Q |
203 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
302 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47771525 |
attaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgtt |
47771624 |
T |
|
| Q |
303 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
345 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47771625 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47771667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 47775677 - 47775819
Alignment:
| Q |
203 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
302 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47775677 |
attaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgtt |
47775776 |
T |
|
| Q |
303 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
345 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47775777 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47775819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 6502814 - 6502773
Alignment:
| Q |
30 |
gagaatacagaatatctctcaagctttgtaagtcatactttt |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6502814 |
gagaatacagaatatctctcaagctttgtaagtcataatttt |
6502773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 6514837 - 6514779
Alignment:
| Q |
30 |
gagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatcttt |
88 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| || ||||| |||||||||| |
|
|
| T |
6514837 |
gagaatacggaatatctctcgagctttgtaagtcataattgtcatgcaatcatatcttt |
6514779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 27367975 - 27367905
Alignment:
| Q |
285 |
ccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgc |
355 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||| ||||| || ||||| |||| |||| | ||||||| |
|
|
| T |
27367975 |
ccaaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgc |
27367905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 28843869 - 28843804
Alignment:
| Q |
215 |
ttcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctag |
280 |
Q |
| |
|
|||| |||||||||| | ||||| || |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
28843869 |
ttcaagaaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctag |
28843804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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