View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_high_14 (Length: 318)
Name: NF0661_high_14
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 54219201 - 54218942
Alignment:
| Q |
30 |
aagacttgacatcagattctttgccttgctgtatcaaatcttctctcaaattatgttctttttcagattttgatggagatgaaattgaaatccaattggt |
129 |
Q |
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| T |
54219201 |
aagacttgacatcagattctttgccttgctgtatcaaatcttctctcaaattatgttctttttcagattttgatggagatgaaattgaaatccaattgtt |
54219102 |
T |
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| Q |
130 |
aaagtgtttgacagaaaatggcacacagttctagaggagatcaacatattttgttccggaggtttatcatcaaatttgaagaagctgactgatgtgagga |
229 |
Q |
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| T |
54219101 |
aaagtgtttgacagaaaatgccaca--gttctagaggcgatcaacatattttgttccggaggtttatcatcaaatttgaagaagctgactgatgtgagga |
54219004 |
T |
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| Q |
230 |
accacgtgcaatctttaggcctgggaagttgcgtcttcaaatttcactgaatttcctttttt |
291 |
Q |
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| T |
54219003 |
accacgtgcaatctttaggcctgggaagttgcgtcttcaaatttcactgaatttcctttttt |
54218942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 31217601 - 31217373
Alignment:
| Q |
30 |
aagacttgacatcagattctttgccttgctgtatcaaatcttctctcaaattatgttctttttcagattttgatggagatgaaattgaaatccaattggt |
129 |
Q |
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| T |
31217601 |
aagactggacatcagattcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtggagatgaagccgaaatcagattggt |
31217502 |
T |
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| Q |
130 |
aaagtgtttgacagaaaatggcacacagtt-ctagaggagatcaacatattttgttccggaggtttatcatcaaatttgaagaagctgactgatgtgagg |
228 |
Q |
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| T |
31217501 |
gaagtttttgttagaaaatgtcac---gttattaagggagatgaacatttactgtactggatatctatcaaaaaaatcgaagaagctggctgatgtgagg |
31217405 |
T |
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| Q |
229 |
aaccacgtgcaatctttaggcctgggaagttg |
260 |
Q |
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| T |
31217404 |
aaccaattgcaagctttaggcatgggaagttg |
31217373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 17595307 - 17595368
Alignment:
| Q |
39 |
catcagattctttgccttgctgtatcaaatcttctctcaaattatgttctttttcagatttt |
100 |
Q |
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| T |
17595307 |
catcaaattcatttccttggtgtttcacatcttctctcaaagtatgttctatttcagatttt |
17595368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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