View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0661_high_2 (Length: 606)
Name: NF0661_high_2
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_high_2 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 313 - 579
Target Start/End: Complemental strand, 26764240 - 26763974
Alignment:
| Q |
313 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26764240 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
26764141 |
T |
|
| Q |
413 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26764140 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
26764041 |
T |
|
| Q |
513 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26764040 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
26763974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 90 - 302
Target Start/End: Complemental strand, 26765582 - 26765370
Alignment:
| Q |
90 |
cttatgacttgaattttacaatcacattgattttcaatccaagccttaaacctccaaaaaacttctacaacttcagacttaaatctcaagaaataaatcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26765582 |
cttatgacttgaattttacaatcacattgattttcaatccaagtcttaaacctccaaaaaacttctgcaacttcagacttaaatctcaagaaataaatcc |
26765483 |
T |
|
| Q |
190 |
agcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26765482 |
agcacattctagtaaaatcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
26765383 |
T |
|
| Q |
290 |
caatttttgtgat |
302 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26765382 |
caatttttgtgat |
26765370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 43442049 - 43441985
Alignment:
| Q |
327 |
ttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcat |
391 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
43442049 |
ttgattgtctcagactctttcattttctgcatctcaaattccctcatcaaattcagcacttgcat |
43441985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 19965700 - 19965627
Alignment:
| Q |
318 |
gcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcat |
391 |
Q |
| |
|
|||||||| || |||||||| |||||||||||| ||||||||||| || || |||||||| ||| ||||||| |
|
|
| T |
19965700 |
gcatactctttaattgtttcagactccttcatcttttgcatctcaaattctctaatcaaattaagcgcttgcat |
19965627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 313 - 579
Target Start/End: Original strand, 35930214 - 35930480
Alignment:
| Q |
313 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35930214 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
35930313 |
T |
|
| Q |
413 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35930314 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
35930413 |
T |
|
| Q |
513 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35930414 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
35930480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 90 - 302
Target Start/End: Original strand, 35928872 - 35929084
Alignment:
| Q |
90 |
cttatgacttgaattttacaatcacattgattttcaatccaagccttaaacctccaaaaaacttctacaacttcagacttaaatctcaagaaataaatcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35928872 |
cttatgacttgaattttacaatcacattgattttcaatccaagtcttaaacctccaaaaaacttctgcaacttcagacttaaatctcaagaaataaatcc |
35928971 |
T |
|
| Q |
190 |
agcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928972 |
agcacattctagtaaaatcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
35929071 |
T |
|
| Q |
290 |
caatttttgtgat |
302 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35929072 |
caatttttgtgat |
35929084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 8986383 - 8986319
Alignment:
| Q |
327 |
ttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcat |
391 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8986383 |
ttgattgtctcagactctttcattttctgcatctcaaattccctcatcaaattcagcacttgcat |
8986319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 35972824 - 35972888
Alignment:
| Q |
327 |
ttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcat |
391 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
35972824 |
ttgattgtctcagactctttcattttctgcatctcaaattccctcatcaaattcagcacttgcat |
35972888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 35994236 - 35994300
Alignment:
| Q |
327 |
ttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcat |
391 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
35994236 |
ttgattgtctcagactctttcattttctgcatctcaaattccctcatcaaattcagcacttgcat |
35994300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 35940796 - 35940733
Alignment:
| Q |
180 |
aaataaatccagcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttcccttta |
243 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||||| |||| |
|
|
| T |
35940796 |
aaataaatccagcacattctggttaagtcgtcaataaaagcaatataataaagacttccattta |
35940733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 43583238 - 43583200
Alignment:
| Q |
353 |
ctgcatctcaaactccctgatcaaattcagcacttgcat |
391 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
43583238 |
ctgcatctcaaattccctcatcaaattcagcacttgcat |
43583200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 313 - 579
Target Start/End: Original strand, 26712292 - 26712558
Alignment:
| Q |
313 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
412 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26712292 |
tgtcagcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
26712391 |
T |
|
| Q |
413 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26712392 |
ttcatactcttgtttgagaaaatcccaaatttcttttgctgacttcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
26712491 |
T |
|
| Q |
513 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26712492 |
tttgccttcgattttcgctgctttctctccttatgatttttgatttgtgcaattgttggattgtctg |
26712558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 313 - 579
Target Start/End: Original strand, 23434398 - 23434664
Alignment:
| Q |
313 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
412 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23434398 |
tgtcagcatactcattgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
23434497 |
T |
|
| Q |
413 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23434498 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacttcagagccatgattcttgtgaaaattgcttcagaaacagcagaaaatagataagac |
23434597 |
T |
|
| Q |
513 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
579 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| | |||||||||| ||||||||||||| |
|
|
| T |
23434598 |
tttgcctttgattttcgctgctttctctccttatggtttctgatttgtgcaagcgttggattgtctg |
23434664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 90 - 302
Target Start/End: Original strand, 26710950 - 26711162
Alignment:
| Q |
90 |
cttatgacttgaattttacaatcacattgattttcaatccaagccttaaacctccaaaaaacttctacaacttcagacttaaatctcaagaaataaatcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
26710950 |
cttatgacttgaattttacaatcacattgattttcaatccaagtcttaaacctccaaaaaacttctgcaacttcaaacttaaatctcaagaaataaatcc |
26711049 |
T |
|
| Q |
190 |
agcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26711050 |
agcacattctagtaaaatcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
26711149 |
T |
|
| Q |
290 |
caatttttgtgat |
302 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26711150 |
caatttttgtgat |
26711162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 313 - 579
Target Start/End: Original strand, 9795053 - 9795319
Alignment:
| Q |
313 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
412 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795053 |
tgtcagcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
9795152 |
T |
|
| Q |
413 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795153 |
ttcatactcttgtttgagaaaatcccaaatttcttttgctgacttcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
9795252 |
T |
|
| Q |
513 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9795253 |
tttgccttcgattttcgctgctttctctccttatgatttttgatttgtgcaattgttggattgtctg |
9795319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 313 - 579
Target Start/End: Original strand, 45998426 - 45998692
Alignment:
| Q |
313 |
tgtcagcatactccttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
412 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45998426 |
tgtctgcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccctttgactttctcatttcc |
45998525 |
T |
|
| Q |
413 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagac |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45998526 |
ttcatactcttgtttgagaaaatcccaaattgcttttgctgacttcagagtcatgattcttgtgaagattgcttcggaaacagcagaaaatagataagac |
45998625 |
T |
|
| Q |
513 |
tttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttggattgtctg |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | |||||||| | ||||||||||||| |
|
|
| T |
45998626 |
cttgccttcgattttcgctgctttctctccttatggtttctgatttgtgccagcgttggattgtctg |
45998692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 90 - 302
Target Start/End: Original strand, 9793711 - 9793923
Alignment:
| Q |
90 |
cttatgacttgaattttacaatcacattgattttcaatccaagccttaaacctccaaaaaacttctacaacttcagacttaaatctcaagaaataaatcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9793711 |
cttatgacttgaattttacaatcacattgattttcaatccaagtcttaaacctccaaaaaacttctgcaacttcagacttaaatctcaagaaataaatcc |
9793810 |
T |
|
| Q |
190 |
agcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9793811 |
agcacattctagtaaaatcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
9793910 |
T |
|
| Q |
290 |
caatttttgtgat |
302 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9793911 |
caatttttgtgat |
9793923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 90 - 302
Target Start/End: Original strand, 45997084 - 45997296
Alignment:
| Q |
90 |
cttatgacttgaattttacaatcacattgattttcaatccaagccttaaacctccaaaaaacttctacaacttcagacttaaatctcaagaaataaatcc |
189 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45997084 |
cttatgacttgaactttacaatcacattgattttcaatccaagtcttaaacctccaaaaaacttctgcaacttcagacttaaatctcaagaaataaatcc |
45997183 |
T |
|
| Q |
190 |
agcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttccctttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45997184 |
agcacattctagtaaaatcatcaataaaggcaatgtaatatcgacttccccttaaagatatttcaggttgtggtcctccgaggtctgtatgaatcagctg |
45997283 |
T |
|
| Q |
290 |
caatttttgtgat |
302 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45997284 |
caatttttgtgat |
45997296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 472 - 579
Target Start/End: Original strand, 27694671 - 27694778
Alignment:
| Q |
472 |
ttgtgaagattgcttcagaaacagcagaaaatagataagactttgccttcgattttcgctgctttctctccttatgattttttatttgtgcaattgttgg |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27694671 |
ttgtgaagattgcttcagaaacagcagaaaatagataagactttgcctttgattttcgctgctttctctccttatgatttttgatttgtgcaattgttgg |
27694770 |
T |
|
| Q |
572 |
attgtctg |
579 |
Q |
| |
|
|||||||| |
|
|
| T |
27694771 |
attgtctg |
27694778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 26254416 - 26254352
Alignment:
| Q |
327 |
ttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcat |
391 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26254416 |
ttgattgtctcagactctttcattttctgcatctcaaattccctcatcaaattcagcacttgcat |
26254352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 435 - 531
Target Start/End: Original strand, 36030 - 36126
Alignment:
| Q |
435 |
tcccaaattgcttttgctgacatcagagtcatgattcttgtgaagattgcttcagaaacagcagaaaatagataagactttgccttcgattttcgct |
531 |
Q |
| |
|
|||||||| | ||||||| || |||||||||| |||| || || || |||| |||||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
36030 |
tcccaaatagattttgctaacttcagagtcatatttctggtaaatatggcttgagaaacagcacaaaatagacaagactttgcctttgattttcgct |
36126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 35751 - 35833
Alignment:
| Q |
166 |
acttaaatctcaagaaataaatccagcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttccctttaaagat |
248 |
Q |
| |
|
||||||||||||||| |||||| | |||||| || |||| ||| || | |||||||||||||||| |||||||||||||||| |
|
|
| T |
35751 |
acttaaatctcaagatataaattgaacacattatactaaaatcagcattgaaggcaatgtaatatcaacttccctttaaagat |
35833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 20332646 - 20332709
Alignment:
| Q |
180 |
aaataaatccagcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttcccttta |
243 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||||| |||| |
|
|
| T |
20332646 |
aaataaatccagcacattctggttaagtcgtcaataaaagcaatataataaagacttccattta |
20332709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 25430136 - 25430073
Alignment:
| Q |
180 |
aaataaatccagcacattctagtaaagtcatcaataaaggcaatgtaatatcgacttcccttta |
243 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||||| |||| |
|
|
| T |
25430136 |
aaataaatccagcacattctggttaagtcgtcaataaaagcaatataataaagacttccattta |
25430073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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