View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0661_high_4 (Length: 476)

Name: NF0661_high_4
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0661_high_4
NF0661_high_4
[»] chr6 (6 HSPs)
chr6 (1-254)||(20770196-20770449)
chr6 (327-458)||(20770444-20770575)
chr6 (386-458)||(6921495-6921567)
chr6 (385-458)||(6954664-6954737)
chr6 (386-458)||(6943099-6943171)
chr6 (389-458)||(6948025-6948094)
[»] chr7 (5 HSPs)
chr7 (307-456)||(14076469-14076618)
chr7 (307-456)||(14386497-14386646)
chr7 (16-94)||(14075984-14076062)
chr7 (16-94)||(14386012-14386090)
chr7 (222-254)||(29873906-29873938)
[»] chr5 (1 HSPs)
chr5 (332-458)||(18964978-18965104)
[»] scaffold0097 (1 HSPs)
scaffold0097 (386-446)||(16529-16589)
[»] chr2 (1 HSPs)
chr2 (386-446)||(20712690-20712750)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 20770196 - 20770449
Alignment:
Q  1 agttatggaaaacgctcatctctgatcccaccttcgtcaaaatgcccctgcaggtatctaatcgaaactcgcacctcgcacttcacatggacaacggata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  20770196 agttatggaaaacgctcatctctgatcccaccttcgtcaaaatgcacctgcaggtatctaaacgaaactcgtacctcgcacttcacatggacaacggata 20770295  T
Q  101 tttcggatatacatataccgttgcacccatctctgtgagtcttttgctggggagtacgtcgaagcccatcacacatactggaaatcattacagccgattc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20770296 tttcggatatacatataccgttgcacccatctctgtgagtcttttgctggagagtacgtcgaagcccatcacacgtactggaaatcattacagccgattc 20770395  T
Q  201 catgcccgttactgctgtgggattgttggttcgtgcaatggattgatctgtttg 254  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  20770396 catgcccgttactgttgtgggattgttggttcgtgcaatggattgatctatttg 20770449  T

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Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 327 - 458
Target Start/End: Original strand, 20770444 - 20770575
Alignment:
Q  327 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20770444 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatac 20770543  T
Q  427 aaacagttgttactccctcaatgttgtgatga 458  Q
    ||||||||||||||||||||||||||||||||    
T  20770544 aaacagttgttactccctcaatgttgtgatga 20770575  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 458
Target Start/End: Complemental strand, 6921567 - 6921495
Alignment:
Q  386 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatga 458  Q
    |||||||||| ||||| |||||||||| || ||||||||| | ||| ||||| ||||||| ||||||||||||    
T  6921567 aatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatga 6921495  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 6954737 - 6954664
Alignment:
Q  385 aaatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatga 458  Q
    ||||||||||||||||| |||||| ||  || ||||||||| | ||||||||| ||||| | ||||||||||||    
T  6954737 aaatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatga 6954664  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 458
Target Start/End: Complemental strand, 6943171 - 6943099
Alignment:
Q  386 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatga 458  Q
    |||| ||||| ||||| |||||||||| || ||||||||| | | | ||||| ||||||||||||||||||||    
T  6943171 aattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatga 6943099  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 458
Target Start/End: Complemental strand, 6948094 - 6948025
Alignment:
Q  389 ttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatga 458  Q
    ||||||| ||||| |||||||||| || ||||| ||| | || |||||| ||||||| ||||||||||||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatga 6948025  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 456
Target Start/End: Original strand, 14076469 - 14076618
Alignment:
Q  307 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 406  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14076469 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14076568  T
Q  407 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 456  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14076569 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 456
Target Start/End: Original strand, 14386497 - 14386646
Alignment:
Q  307 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 406  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14386497 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14386596  T
Q  407 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 456  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14386597 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 14075984 - 14076062
Alignment:
Q  16 tcatctctgatcccaccttcgtcaaaatgcccctgcaggtatctaatcgaaactcgcacctcgcacttcacatggacaa 94  Q
    |||||||||||||||  ||| ||||||||| |||  || |||||  ||||||| | |||||||||||||| ||||||||    
T  14075984 tcatctctgatcccatattcatcaaaatgcaccttaagctatctgctcgaaacccacacctcgcacttcatatggacaa 14076062  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 14386012 - 14386090
Alignment:
Q  16 tcatctctgatcccaccttcgtcaaaatgcccctgcaggtatctaatcgaaactcgcacctcgcacttcacatggacaa 94  Q
    |||||||||||||||  ||| ||||||||| |||  || |||||  ||||||| | |||||||||||||| ||||||||    
T  14386012 tcatctctgatcccatattcatcaaaatgcaccttaagctatctgctcgaaacccacacctcgcacttcatatggacaa 14386090  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 29873906 - 29873938
Alignment:
Q  222 attgttggttcgtgcaatggattgatctgtttg 254  Q
    ||||||||||| |||||||||||||||||||||    
T  29873906 attgttggttcctgcaatggattgatctgtttg 29873938  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 458
Target Start/End: Complemental strand, 18965104 - 18964978
Alignment:
Q  332 gttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatacaaaca 431  Q
    ||||||||||| |||| ||||||||||||| ||| || | ||||   ||  || |||||||||| ||||| |||||| ||| ||  |||||||  | |||    
T  18965104 gttggttggtccgtcaccgttataattgtcatcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacaca 18965005  T
Q  432 gttgttactccctcaatgttgtgatga 458  Q
    |||||||||||||| ||||||||||||    
T  18965004 gttgttactccctccatgttgtgatga 18964978  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 16589 - 16529
Alignment:
Q  386 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 446  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  16589 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 16529  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 20712750 - 20712690
Alignment:
Q  386 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 446  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  20712750 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 20712690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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