View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0661_high_5 (Length: 413)
Name: NF0661_high_5
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 12800974 - 12801309
Alignment:
| Q |
5 |
ccaacagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgttgttcattgcactcatggagtgtagtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12800974 |
ccaacagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgttgttcattgcactcatggagtgtagtt |
12801073 |
T |
|
| Q |
105 |
gctgctctctttgtgaaaatcctccaccacttgtagtattcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatctgatcctcc |
204 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12801074 |
gctgttctctttgtgaaaatcctccaccacttgtagtattcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatctgatcctcc |
12801173 |
T |
|
| Q |
205 |
aaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattgtgaaactgaccaagattattgttatcatatatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12801174 |
aaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattgtgaaactgaccaaggttattgttatcatatatt |
12801273 |
T |
|
| Q |
305 |
gaagtgtttccattcccaagagagttcatcaatcca |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12801274 |
gaagtgtttccattcccaagagagttcatcaatcca |
12801309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 42289627 - 42289564
Alignment:
| Q |
144 |
tcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatctgatcctccaaa |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
42289627 |
tcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaa |
42289564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 572 times since January 2019
Visitors: 4090