View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_high_7 (Length: 394)
Name: NF0661_high_7
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 55173957 - 55173564
Alignment:
| Q |
1 |
aacaatgatttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgttcatccaagccgaatggaaccacgggt |
100 |
Q |
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| T |
55173957 |
aacaatgatttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgttcatccaagccgaatggaaccacgggt |
55173858 |
T |
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| Q |
101 |
atgtatgtgtgggaggcttcttctaacctagctttatacattactattctttctaaccctctcaatactttcataaatcagaggacttccatattggcta |
200 |
Q |
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| T |
55173857 |
atgtatgtgtgggaggcttcttctaacctagttttatacatcactattctttctaaccctctcaatactttcataaatcagaggacttccatattggcta |
55173758 |
T |
|
| Q |
201 |
agagaggttccagggatcatattccgctctgacaatgaaccctacaagaaacacatgaaagcatacgtgtcaaaaattatccaaatgatgaaagatgaga |
300 |
Q |
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| T |
55173757 |
agagaggttccagggatcatattccgctctgacaatgaaccctacaagaaatacatgaaagcatacgtgtcaaaaattatccaaatgatgaaagatgaga |
55173658 |
T |
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| Q |
301 |
agctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcgtatgaagagaagggagatag |
394 |
Q |
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| T |
55173657 |
agctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatag |
55173564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 27720600 - 27720705
Alignment:
| Q |
5 |
atgatttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgttcatccaagccgaatggaaccacgggtatgt |
104 |
Q |
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||||||||||||| ||| ||| |||||| ||| ||||||||||| || ||||| || |||| || ||||||||||| |||||||| ||||||||||| |
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| T |
27720600 |
atgatttggtgaaattccttaagcttgtacaagagaaaggaatgtatgttacccttagaattggccctttcatccaagctgaatggaatcacgggtatgt |
27720699 |
T |
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| Q |
105 |
atgtgt |
110 |
Q |
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||||| |
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| T |
27720700 |
gtgtgt |
27720705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 27720793 - 27720854
Alignment:
| Q |
180 |
agaggacttccatattggctaagagaggttccagggatcatattccgctctgacaatgaacc |
241 |
Q |
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| T |
27720793 |
agaggacttccatattggctaagagaggtccctgacatcatattccgttctaacaatgaacc |
27720854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 27720986 - 27721035
Alignment:
| Q |
288 |
atgaaagatgagaagctctttgctccccaaggaggccccatcatcttggc |
337 |
Q |
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|||||||| || || ||||||||||| ||||||||||| ||||||||||| |
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| T |
27720986 |
atgaaagaagaaaaactctttgctcctcaaggaggccctatcatcttggc |
27721035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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