View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_1 (Length: 741)
Name: NF0661_low_1
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_1 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 55 - 602
Target Start/End: Complemental strand, 31338767 - 31338220
Alignment:
| Q |
55 |
catcatcatcatcatcttccactctccaagaaactctcctccggttatcaaactcaatcacatcctctctcgccgcaacatcatacactcctcccaaaac |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31338767 |
catcatcatcatcatcttccactctccaagaaactctcctccggttatcaaactcaatcacatcctctctcgccgcaacatcatacactcctcccaaaac |
31338668 |
T |
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| Q |
155 |
cgccaccatctccgtcaaagcatttctcgaaccactcctcacaccaacaaattccatcaaagacttcgctctagcatgcgctcttctctcatcctccacc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31338667 |
cgccaccatctccgtcaaagcatttctcgaaccactcctcacaccaacaaattccatcaaagacttcgctctagcatgcgctcttctctcatcctccacc |
31338568 |
T |
|
| Q |
255 |
ctcaccaactccgagcttctctcatggatccccaatcacctctcctctctcgcatctgcttcctttttcgaactttcccaaatttatttaacagttttca |
354 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31338567 |
ctcatcaactccgagcttctctcatggatccccaatcacctctcctctctcgcatctgcttcctttttcgaactatcccaaatttatttaacagttttca |
31338468 |
T |
|
| Q |
355 |
ataatagaaacaccgaaaaggttgctgaattgggtttggattgtgacttggttcctccagagaagaggttgctgattgaattgtttcctgaactggttcc |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31338467 |
ataatagaaacaccgaaaaggttgctgaattgggtttggattgtgacttggttcctccagagaagaggttgctgattgaattgtttcctgaactggttcc |
31338368 |
T |
|
| Q |
455 |
tattttgaaggagaggattaaggagagttcttttgataagtctgatgagtttgatgagttttctgctgcgtcggctagagttccggttgggttcgcgatt |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31338367 |
tattttgaaggagaggattaaggagagttcttttgataagtctgatgagtttgatgagttttctgctgcgtcggctagagttccggttgggttcgcgatt |
31338268 |
T |
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| Q |
555 |
cttgctgcttatcagtttagatggtttgttactcaggtatgaggatga |
602 |
Q |
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| T |
31338267 |
cttgctgcttatcagtttagatggtttgttactcaggtatgaggatga |
31338220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 629 - 721
Target Start/End: Complemental strand, 31338193 - 31338101
Alignment:
| Q |
629 |
atgactttgaaattcgctatgttgcggtcaaaattgcagttgtggaccacaatttaaaaccatgttgtgtccattataagatattgatgatgt |
721 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31338193 |
atgacttcaaaattcgctatgttgcggtcaaaattgcagttgtggaccacaatttaaaaccatgttgtgtccattataagatattgatgatgt |
31338101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 657 - 692
Target Start/End: Complemental strand, 159 - 124
Alignment:
| Q |
657 |
caaaattgcagttgtggaccacaatttaaaaccatg |
692 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
159 |
caaaattgcagttgtggaccacaatttaaaaccatg |
124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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