View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_10 (Length: 435)
Name: NF0661_low_10
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 202 - 422
Target Start/End: Complemental strand, 28791374 - 28791154
Alignment:
| Q |
202 |
cttaagatggaggtgctttccaataagattgacaggaaacaactgaaaaccggagatcacatctactcttggaggcaggcttacgtctatgcacatcatg |
301 |
Q |
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| T |
28791374 |
cttaagatggaggtgctttccaataagattgataggaaacaactgaaaaccggagatcacatctactcttggaggcaggcttacgtctatgcacatcatg |
28791275 |
T |
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| Q |
302 |
gtcatatcttttctcttatattcatctgcccgtttatattttcatatttatgaccattttattatgtatcaaacttatcctatgcataagcatcatactg |
401 |
Q |
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| T |
28791274 |
gtcatatcttttctcttatattcatctgcccatttatattttcatatttatgaccattttattatgtatcaaacttatcctatgcataagcatcatactg |
28791175 |
T |
|
| Q |
402 |
aagttaatgtcatatatgttc |
422 |
Q |
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| T |
28791174 |
aagttaatgtcatatatgttc |
28791154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 28791480 - 28791414
Alignment:
| Q |
96 |
aaatgtcatattttgtgcctcaaaaataatagtggaaggtctagaggcaaagaaatcactatatatg |
162 |
Q |
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| T |
28791480 |
aaatgtcatattttgtgcctcaaaaataatagtggaaggtctagaggcaaagaaatcactatatatg |
28791414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 238 - 328
Target Start/End: Complemental strand, 28784349 - 28784259
Alignment:
| Q |
238 |
aaacaactgaaaaccggagatcacatctactcttggaggcaggcttacgtctatgcacatcatggtcatatcttttctcttatattcatct |
328 |
Q |
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| T |
28784349 |
aaacaattgaaagctggagatcacatctactcttggaggcaggcttacatctatgctcatcatggtcatctcttctctcttttattcatct |
28784259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 28787512 - 28787455
Alignment:
| Q |
96 |
aaatgtcatattttgtgcctcaaaaata--atagtggaaggtctagaggcaaagaaat |
151 |
Q |
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|||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
28787512 |
aaatgtcatattgtttgcctcaaaaatataataggggaaggtctagaggcaaagaaat |
28787455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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