View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0661_low_14 (Length: 398)

Name: NF0661_low_14
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0661_low_14
NF0661_low_14
[»] chr6 (18 HSPs)
chr6 (30-387)||(24225962-24226324)
chr6 (113-235)||(6793486-6793606)
chr6 (143-219)||(512765-512841)
chr6 (122-189)||(28067313-28067380)
chr6 (164-220)||(457692-457748)
chr6 (164-218)||(26847183-26847237)
chr6 (140-212)||(32267018-32267090)
chr6 (134-210)||(3037376-3037452)
chr6 (158-213)||(28729978-28730033)
chr6 (164-218)||(8585745-8585799)
chr6 (146-239)||(31175973-31176064)
chr6 (113-186)||(10349144-10349216)
chr6 (150-211)||(28963591-28963652)
chr6 (122-183)||(33906583-33906644)
chr6 (163-195)||(9976973-9977005)
chr6 (112-209)||(6139309-6139406)
chr6 (164-204)||(13418522-13418562)
chr6 (233-261)||(33906533-33906561)
[»] chr8 (23 HSPs)
chr8 (134-262)||(44132825-44132951)
chr8 (163-262)||(15135968-15136064)
chr8 (149-261)||(1898050-1898160)
chr8 (134-213)||(35910593-35910670)
chr8 (113-219)||(226339-226443)
chr8 (113-219)||(702752-702856)
chr8 (113-219)||(739962-740066)
chr8 (113-219)||(863857-863961)
chr8 (113-261)||(6473922-6474064)
chr8 (136-211)||(20896188-20896263)
chr8 (106-193)||(41951169-41951256)
chr8 (114-219)||(33681267-33681370)
chr8 (164-213)||(10968541-10968590)
chr8 (121-194)||(12964330-12964403)
chr8 (160-213)||(20224903-20224956)
chr8 (164-211)||(4834971-4835018)
chr8 (128-210)||(41649970-41650052)
chr8 (137-186)||(42127209-42127258)
chr8 (144-218)||(26295413-26295487)
chr8 (144-218)||(26308670-26308744)
chr8 (161-211)||(44148212-44148262)
chr8 (134-195)||(15682638-15682699)
chr8 (142-187)||(25391137-25391182)
[»] chr4 (20 HSPs)
chr4 (134-262)||(50041766-50041892)
chr4 (134-262)||(50048988-50049114)
chr4 (116-219)||(36498592-36498695)
chr4 (140-219)||(52198367-52198446)
chr4 (150-211)||(29544163-29544224)
chr4 (110-218)||(44015406-44015514)
chr4 (164-213)||(19473050-19473099)
chr4 (134-187)||(33913962-33914015)
chr4 (145-211)||(5052112-5052178)
chr4 (150-211)||(23332134-23332195)
chr4 (150-211)||(46079341-46079402)
chr4 (150-211)||(52673199-52673260)
chr4 (134-201)||(30643603-30643670)
chr4 (164-195)||(27841089-27841120)
chr4 (164-211)||(29693237-29693284)
chr4 (164-210)||(29724351-29724397)
chr4 (164-214)||(53176882-53176932)
chr4 (134-205)||(32355002-32355070)
chr4 (113-193)||(888699-888779)
chr4 (163-262)||(34765130-34765227)
[»] chr2 (17 HSPs)
chr2 (106-236)||(28640118-28640246)
chr2 (107-262)||(21835972-21836123)
chr2 (122-197)||(1208617-1208692)
chr2 (150-211)||(23395962-23396023)
chr2 (134-211)||(32832594-32832671)
chr2 (123-219)||(13772777-13772873)
chr2 (164-211)||(6752075-6752122)
chr2 (107-172)||(14818694-14818759)
chr2 (150-211)||(39729015-39729076)
chr2 (150-211)||(41069674-41069735)
chr2 (164-212)||(40204727-40204775)
chr2 (130-213)||(13477688-13477771)
chr2 (145-187)||(8209317-8209359)
chr2 (164-219)||(38529873-38529928)
chr2 (121-211)||(11226146-11226236)
chr2 (140-184)||(5455871-5455915)
chr2 (174-218)||(39267263-39267307)
[»] chr5 (18 HSPs)
chr5 (116-261)||(3622155-3622298)
chr5 (138-208)||(9956624-9956694)
chr5 (150-212)||(19824613-19824675)
chr5 (145-218)||(33953152-33953225)
chr5 (164-211)||(34928837-34928884)
chr5 (164-212)||(14281809-14281858)
chr5 (121-205)||(17250474-17250558)
chr5 (164-212)||(22029850-22029898)
chr5 (134-214)||(28975577-28975656)
chr5 (129-193)||(32821924-32821988)
chr5 (164-201)||(18623597-18623634)
chr5 (158-211)||(22658864-22658917)
chr5 (169-218)||(33922856-33922905)
chr5 (141-190)||(37484836-37484885)
chr5 (116-219)||(3622320-3622423)
chr5 (164-211)||(14151943-14151990)
chr5 (122-219)||(8230771-8230867)
chr5 (164-212)||(27554923-27554971)
[»] chr1 (27 HSPs)
chr1 (121-219)||(19431383-19431481)
chr1 (134-211)||(3950296-3950373)
chr1 (114-219)||(46325584-46325688)
chr1 (136-219)||(33939589-33939672)
chr1 (121-219)||(11872181-11872279)
chr1 (134-218)||(44448492-44448576)
chr1 (114-205)||(46325408-46325497)
chr1 (121-219)||(17368389-17368487)
chr1 (111-219)||(26056777-26056888)
chr1 (150-211)||(48914986-48915047)
chr1 (150-211)||(48915377-48915438)
chr1 (116-205)||(49315741-49315830)
chr1 (113-193)||(7537002-7537082)
chr1 (136-211)||(24671171-24671246)
chr1 (164-210)||(49177438-49177483)
chr1 (113-213)||(4213839-4213939)
chr1 (121-184)||(37719044-37719107)
chr1 (116-186)||(31108760-31108830)
chr1 (150-211)||(48915178-48915237)
chr1 (122-175)||(4347451-4347504)
chr1 (152-193)||(6286457-6286498)
chr1 (164-200)||(15106251-15106287)
chr1 (164-231)||(34430054-34430119)
chr1 (150-211)||(19456311-19456372)
chr1 (158-211)||(26478599-26478652)
chr1 (168-213)||(50175961-50176006)
chr1 (164-200)||(45781221-45781257)
[»] chr3 (13 HSPs)
chr3 (138-219)||(34305804-34305885)
chr3 (121-211)||(10688608-10688698)
chr3 (113-186)||(52404685-52404758)
chr3 (142-188)||(20345072-20345118)
chr3 (129-214)||(16278780-16278865)
chr3 (117-192)||(19138401-19138476)
chr3 (164-211)||(39485471-39485518)
chr3 (149-195)||(43170419-43170465)
chr3 (121-205)||(7654554-7654639)
chr3 (134-195)||(42681853-42681914)
chr3 (150-211)||(46348393-46348454)
chr3 (128-192)||(30240875-30240939)
chr3 (121-185)||(39972992-39973056)
[»] chr7 (21 HSPs)
chr7 (107-212)||(27311776-27311879)
chr7 (111-186)||(42691095-42691170)
chr7 (164-218)||(32204785-32204839)
chr7 (113-212)||(42971643-42971742)
chr7 (141-219)||(22715809-22715887)
chr7 (153-211)||(32279295-32279353)
chr7 (166-212)||(33957481-33957527)
chr7 (113-187)||(38701532-38701606)
chr7 (158-195)||(43279245-43279282)
chr7 (160-213)||(44309415-44309468)
chr7 (164-211)||(11369056-11369103)
chr7 (163-213)||(23021210-23021258)
chr7 (164-211)||(37685191-37685238)
chr7 (177-219)||(8685962-8686004)
chr7 (114-200)||(30061154-30061240)
chr7 (145-211)||(40591039-40591105)
chr7 (150-211)||(2628437-2628498)
chr7 (145-190)||(19699882-19699927)
chr7 (164-201)||(43368497-43368534)
chr7 (164-211)||(9488770-9488818)
chr7 (121-193)||(30880455-30880527)
[»] scaffold0085 (1 HSPs)
scaffold0085 (141-219)||(31591-31669)
[»] scaffold0008 (1 HSPs)
scaffold0008 (107-195)||(263758-263846)
[»] scaffold0252 (1 HSPs)
scaffold0252 (162-195)||(8121-8154)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 387
Target Start/End: Original strand, 24225962 - 24226324
Alignment:
Q  30 cttctcatgatgtcattgtgaacccccacacacaatctctggtcttgcgtctttatcccctctttagaccgggtaac-----ggtgattttggtggcttt 124  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| || | |||||||||||||||||  |||||||     ||||| ||||||||||||    
T  24225962 cttctcatgatgtcattgtggacccccacagacaatctctggtctcgcctatttatcccctctttagattgggtaacacttcggtgactttggtggcttt 24226061  T
Q  125 gtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtc 224  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24226062 gtctttatttctctcctaaccaataattctctgtcatcaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtc 24226161  T
Q  225 acaaaagtcaccaaaatacaaaatcactcaagtatttctcctttagactctatcgccaacacatctctccccatctttgtattttttaatggtggtagct 324  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24226162 acaaaagtcaccaaaatacaaagtcactcaagtatttctcctttagactctatcgccaacacatctctccccatctttgtattttttcatggtggtagct 24226261  T
Q  325 ttgcattcatgagtttatcttctacctaataagatgatatttatcactcattttctcgttcat 387  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24226262 ttgcattcatgagtttatcttctacctaataagatgatatttgtcactcattttctcgttcat 24226324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 6793486 - 6793606
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    |||||||  ||||||| ||| ||| ||||||||||||||| ||| |||| |||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  6793486 tttggtgattttgtctctatctctatcctaaccaataattatctctcatcaaaataatttattttaatcactcatctatcgttctctctcatctaaaata 6793585  T
Q  213 ctctaaattgtcacaaaagtcac 235  Q
    | |||||  ||||| ||||||||    
T  6793586 cactaaa--gtcaccaaagtcac 6793606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 512765 - 512841
Alignment:
Q  143 accaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    ||||||| |||||| |||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||    
T  512765 accaatatttctctctcatcaaaataatttattttaatcactcatctattattctctctcatctaaaatacactaaa 512841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 28067313 - 28067380
Alignment:
Q  122 tttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatct 189  Q
    ||||||||||| ||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||    
T  28067313 tttgtctttatctctcttctaaccaatcattctctctcatcaaaataatttattttaatcattcatct 28067380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 457692 - 457748
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaat 220  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  457692 aaataatttattttaatcattcatccatcattctctctcatctaaaatacactaaat 457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 26847183 - 26847237
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  26847183 aaataatttattttactcattcatctatcattctctctcatctaaaatacactaa 26847237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 32267090 - 32267018
Alignment:
Q  140 ctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    |||||||||||||||||  ||| | |||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  32267090 ctaaccaataattctcttccatcagaataatttattttaatcattaatctatcattctcattcatctaaaata 32267018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 3037452 - 3037376
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaa 210  Q
    |||||| |||||| | ||||||| ||||  ||| ||||||||||||||||||||| | |||||||||||||| ||||    
T  3037452 tctctcttaaccattcattctctttcatctaaaaaatttattttaatcattcatccaacattttctctcatcaaaaa 3037376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 28730033 - 28729978
Alignment:
Q  158 tcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    |||| ||||||||||||||||| || | |||||||||| |||||||||||||||||    
T  28730033 tcatcaaaataatttattttaagcactgatctatcattctctctcatctaaaatac 28729978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 8585745 - 8585799
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    |||| |||||||||||||||||||| |||||| ||| ||||||||||||| ||||    
T  8585745 aaatcatttattttaatcattcatccatcattctctttcatctaaaatacactaa 8585799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 31175973 - 31176064
Alignment:
Q  146 aataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtcaccaaa 239  Q
    |||||||||||  ||| ||||||||||| ||||||||  | ||||||||| | ||||||||||||||| |||||  ||||  ||||||||||||    
T  31175973 aataattctcttgcatcaaaataatttaatttaatcacacgtctatcattctttctcatctaaaatacactaaa--gtcatcaaagtcaccaaa 31176064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 10349144 - 10349216
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattca 186  Q
    ||||||| |||||||| ||| |||||||||||| |||||| | | || |||||||||||||||||||| |||||    
T  10349144 tttggtgtctttgtctctatctctctcctaaccgataatt-tttctccttaaaataatttattttaattattca 10349216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 28963652 - 28963591
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| |||| ||||||| |||||||||||||||||   ||||| |||||||||||||||    
T  28963652 attctctctcatcaaaataagttattttaatcattcattcttcattctctctcatctaaaat 28963591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 33906644 - 33906583
Alignment:
Q  122 tttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcat 183  Q
    ||||||| ||| ||||| ||||| ||||||||||| |||| ||||| |||||||||||||||    
T  33906644 tttgtctctatctctcttctaacgaataattctctttcatcaaaatcatttattttaatcat 33906583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 9977005 - 9976973
Alignment:
Q  163 aaaataatttattttaatcattcatctatcatt 195  Q
    |||||||||||||||||||||||||||||||||    
T  9977005 aaaataatttattttaatcattcatctatcatt 9976973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 6139309 - 6139406
Alignment:
Q  112 ttttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaa 209  Q
    |||||||| ||||||   ||| |||||  |||||| | ||||||| ||||  |||||||||||||||||||||  |||| |||| |||||||| ||||    
T  6139309 ttttggtgtctttgttcctatctctcttttaaccattcattctctctcatctaaataatttattttaatcatttgtctaacattctctctcatttaaa 6139406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 13418562 - 13418522
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcat 204  Q
    |||||||||||||||| |||| |||||||||||| ||||||    
T  13418562 aaataatttattttaaacatttatctatcattttttctcat 13418522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 33906561 - 33906533
Alignment:
Q  233 caccaaaatacaaaatcactcaagtattt 261  Q
    |||||||||||||||||||||||||||||    
T  33906561 caccaaaatacaaaatcactcaagtattt 33906533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 44132951 - 44132825
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtc 233  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||| ||| ||    
T  44132951 tctctcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaatacactaaa--gtcaccaaaatc 44132854  T
Q  234 accaaaatacaaaatcactcaagtatttc 262  Q
    |||||||| |||| ||| |||||||||||    
T  44132853 accaaaatgcaaagtcattcaagtatttc 44132825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 15135968 - 15136064
Alignment:
Q  163 aaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtcaccaaaatacaaaatcactcaagtatttc 262  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||   ||||| |||||||| |||||||||||||| |||||||||||    
T  15135968 aaaataatttattttaatcactcatctatcactttctcttatctaaaatacactaa---gtcaccaaagtcacaaaaatacaaaatcattcaagtatttc 15136064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 1898160 - 1898050
Alignment:
Q  149 aattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtcaccaaaatacaaaat 248  Q
    |||||||| | || |||||||||||||||||||| | || ||||||| ||||||||||||||||  |||||  ||||  ||||||| |||||| ||||||    
T  1898160 aattctcttttatcaaaataatttattttaatcagttatatatcattctctctcatctaaaatatactaaa--gtcatcaaagtcatcaaaatgcaaaat 1898063  T
Q  249 cactcaagtattt 261  Q
    |||||||||||||    
T  1898062 cactcaagtattt 1898050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 35910593 - 35910670
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||||||||| |||||   |||||||||||||||||    
T  35910593 tctctcctaaccaataattccctctcatcaaaatgatttattttaatcattcatttatca--ctctctcatctaaaatac 35910670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 226443 - 226339
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||  |||| || |||||||||||||||||||||  ||| | | ||| ||||||||||||    
T  226443 tttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaata 226346  T
Q  213 ctctaaa 219  Q
    | |||||    
T  226345 cactaaa 226339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 702856 - 702752
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||  |||| || |||||||||||||||||||||  ||| | | ||| ||||||||||||    
T  702856 tttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaata 702759  T
Q  213 ctctaaa 219  Q
    | |||||    
T  702758 cactaaa 702752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 740066 - 739962
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||  |||| || |||||||||||||||||||||  ||| | | ||| ||||||||||||    
T  740066 tttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaata 739969  T
Q  213 ctctaaa 219  Q
    | |||||    
T  739968 cactaaa 739962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 863961 - 863857
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||  |||| || |||||||||||||||||||||  ||| | | ||| ||||||||||||    
T  863961 tttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaata 863864  T
Q  213 ctctaaa 219  Q
    | |||||    
T  863863 cactaaa 863857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 6474064 - 6473922
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    |||||||  ||||||| ||| ||||| ||||| ||||||| |||  |||||||||||||||||||||||| |||| ||| ||||  |||| |||||||||    
T  6474064 tttggtgattttgtctatatctctcttctaactaataattatct--cattaaaataatttattttaatcactcatatattattt--tctcgtctaaaata 6473969  T
Q  213 ctctaaattgtcacaaaagtcaccaaaatacaaaatcactcaagtattt 261  Q
    | |||||  ||||  ||||| || |||||||||| ||| ||||||||||    
T  6473968 cactaaa--gtcattaaagttacaaaaatacaaagtcattcaagtattt 6473922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 20896263 - 20896188
Alignment:
Q  136 tctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||| ||| |||| ||||||| ||||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  20896263 tctcttaatcaatcattctctctcatctaaataatttattttaatcattcatatatcattatctctcatctaaaat 20896188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 41951169 - 41951256
Alignment:
Q  106 cggtgattttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatca 193  Q
    ||||||||||| || |||||||| ||| |||||||||| |||||||||||| |||| || |||||||| |||| |||||||| |||||    
T  41951169 cggtgattttgatgactttgtctctatctctctcctaatcaataattctctctcatcaagataatttaatttactcattcatttatca 41951256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 33681370 - 33681267
Alignment:
Q  114 ttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaa-taatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    |||||| |||||||| |||  |||||||||||||| || |||| |||| |||| |||||||||||||||||| |||||||||| |||| |||| ||||||    
T  33681370 ttggtgactttgtctctat--ctctcctaaccaatcatgctctctcataaaaaataatttattttaatcatttatctatcattctctcacatc-aaaata 33681274  T
Q  213 ctctaaa 219  Q
    | |||||    
T  33681273 cactaaa 33681267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 10968590 - 10968541
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  10968590 aaataatttattttaatctttcatctaatattttctctcatctaaaatac 10968541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 12964330 - 12964403
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcat 194  Q
    |||||| | |||||||||  ||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||    
T  12964330 ctttgtgtctatttctcttttaatcaatcattctctttcatcaaaataatttattttaatcattcatatatcat 12964403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 20224956 - 20224903
Alignment:
Q  160 attaaaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    ||||||||||||||||||||| ||| |||||||||||||| | |||||||||||    
T  20224956 attaaaataatttattttaattatttatctatcattttctttaatctaaaatac 20224903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 4835018 - 4834971
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  4835018 aaataatttattttaatcattcattcatcattctctctcatctaaaat 4834971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 41649970 - 41650052
Alignment:
Q  128 tttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaa 210  Q
    ||||| ||||||||||| ||||||| ||| | || |||||||||||| ||||||| | ||||||||||   ||||||||||||    
T  41649970 tttatctctctcctaacgaataattttctcttatcaaaataatttatcttaatcacttatctatcattaattctcatctaaaa 41650052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 42127258 - 42127209
Alignment:
Q  137 ctcctaaccaataattctctatcattaaaataatttattttaatcattca 186  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||||||    
T  42127258 ctcctaaccaataattatttctcatcaaaataatttattttaatcattca 42127209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 26295487 - 26295413
Alignment:
Q  144 ccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    ||||||||||||| ||||  |||||||||| ||| |||||||||| | | || || |||||||||||||| ||||    
T  26295487 ccaataattctctttcatctaaataatttactttgatcattcatccaccgttctccctcatctaaaatacactaa 26295413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 26308744 - 26308670
Alignment:
Q  144 ccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    ||||||||||||| ||||  |||||||||| ||| |||||||||| | | || || |||||||||||||| ||||    
T  26308744 ccaataattctctttcatctaaataatttactttgatcattcatccaccgttctccctcatctaaaatacactaa 26308670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 44148262 - 44148212
Alignment:
Q  161 ttaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||||||||||| ||||||||||| ||  |||||| ||||||    
T  44148262 ttaaaataatttattttaatcgttcatctatcacttcatctcatttaaaat 44148212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 15682699 - 15682638
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcatt 195  Q
    |||||||||||| || ||||| | |||| ||||||| |||||||| |||||||| |||||||    
T  15682699 tctctcctaaccgatcattctttttcatcaaaataacttattttagtcattcatatatcatt 15682638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 25391182 - 25391137
Alignment:
Q  142 aaccaataattctctatcattaaaataatttattttaatcattcat 187  Q
    ||||| ||||||||||||||  || |||||||||||||||||||||    
T  25391182 aaccattaattctctatcatctaattaatttattttaatcattcat 25391137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 50041892 - 50041766
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtc 233  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||  ||||| ||| ||    
T  50041892 tctctcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaacacactaaa--gtcaccaaaatc 50041795  T
Q  234 accaaaatacaaaatcactcaagtatttc 262  Q
    |||||||| |||| ||| |||||||||||    
T  50041794 accaaaatgcaaagtcattcaagtatttc 50041766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 50049114 - 50048988
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtc 233  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||  ||||| ||| ||    
T  50049114 tctctcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaacacactaaa--gtcaccaaaatc 50049017  T
Q  234 accaaaatacaaaatcactcaagtatttc 262  Q
    |||||||| |||| ||| |||||||||||    
T  50049016 accaaaatgcaaagtcattcaagtatttc 50048988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 36498695 - 36498592
Alignment:
Q  116 ggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactc 215  Q
    |||| |||||||| ||| ||||| |||||||||||||||||  ||| |||||||||||||||||||| |||||||||||  ||||||||||||||||| |    
T  36498695 ggtgactttgtctctatctctcttctaaccaataattctctcacatcaaaataatttattttaatcactcatctatcatcctctctcatctaaaatacac 36498596  T
Q  216 taaa 219  Q
    ||||    
T  36498595 taaa 36498592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 52198367 - 52198446
Alignment:
Q  140 ctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  52198367 ctaaccaataattatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaatacactaaa 52198446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 29544224 - 29544163
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  29544224 attctctatcatctaaataatttattttaatcattcatttatcattttctctcatctaaaat 29544163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 44015514 - 44015406
Alignment:
Q  110 gattttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaa 209  Q
    |||||||||| | ||||  |||| |||||| ||| ||||  || ||| ||||  |||||||||||||||||||||||||||||||| | |||||||||||    
T  44015514 gattttggtgacattgttcttatctctctcttaatcaatctttatctctcatctaaataatttattttaatcattcatctatcattctttctcatctaaa 44015415  T
Q  210 atactctaa 218  Q
    |||| ||||    
T  44015414 atacactaa 44015406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 19473099 - 19473050
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  19473099 aaataatttattttaatcattcatgtatcattttctctcctctaaaatac 19473050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 33913962 - 33914015
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcat 187  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  33913962 tctctcctaaccaataattctctctcatcaaaatgatttattttaatcattcat 33914015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 5052112 - 5052178
Alignment:
Q  145 caataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||| ||||||| |||| |||||||||||||||||||||| || ||||||| |||||||| ||||||    
T  5052112 caatcattctctctcatcaaaataatttattttaatcatttatttatcattctctctcatttaaaat 5052178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 23332134 - 23332195
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| ||||| ||||||  ||||||||||||||||||| |||| |||||||||||||||    
T  23332134 attctctctcatttaaataacatattttaatcattcatctaacattctctctcatctaaaat 23332195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 46079402 - 46079341
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| ||||  ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  46079402 attctctctcatctaaataatttattttaatcattcattgatcattctctctcatctaaaat 46079341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 52673260 - 52673199
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| |||| |||||||||||||||||| ||||||  |||||| |||||||||||||||    
T  52673260 attctctctcatcaaaataatttattttaattattcattcatcattctctctcatctaaaat 52673199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 30643670 - 30643603
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctct 201  Q
    |||||| ||| |||| ||||||| ||||  ||||||||||||||||||||||||| |||||| |||||    
T  30643670 tctctcttaatcaatcattctctctcatctaaataatttattttaatcattcatccatcattatctct 30643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 27841089 - 27841120
Alignment:
Q  164 aaataatttattttaatcattcatctatcatt 195  Q
    ||||||||||||||||||||||||||||||||    
T  27841089 aaataatttattttaatcattcatctatcatt 27841120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 29693237 - 29693284
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||||||| ||| || ||||||| |||||||||||||||    
T  29693237 aaataatttattttaattatttatttatcattctctctcatctaaaat 29693284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 29724397 - 29724351
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaa 210  Q
    |||||||||||||||||||||||| ||| ||| ||| ||||||||||    
T  29724397 aaataatttattttaatcattcatttattattctctatcatctaaaa 29724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 53176882 - 53176932
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatact 214  Q
    ||||||||||||||||||||||||  || || |||| ||||||||||||||    
T  53176882 aaataatttattttaatcattcattcattatcttctgtcatctaaaatact 53176932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 32355070 - 32355002
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatc 205  Q
    |||| |||| ||||| ||||||| |||| ||| |||||||||||||||   ||||||||||| |||||||||    
T  32355070 tctcgcctagccaatcattctctttcatcaaagtaatttattttaatc---catctatcattatctctcatc 32355002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 888779 - 888699
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatca 193  Q
    ||||||| |||||||||||| |||||  |||| ||| | |  || |||| ||||||||||||||||||| |||| ||||||    
T  888779 tttggtgactttgtctttatatctcttataactaatcaatacctctcatcaaaataatttattttaatctttcacctatca 888699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 34765130 - 34765227
Alignment:
Q  163 aaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtcaccaaaatacaaaatcactcaagtatttc 262  Q
    |||||| |||||| ||||||   |||||||||| ||| |||| |||||||| |||||  |||   ||| |||||||||| |||| |||||||||||||||    
T  34765130 aaaatagtttattataatcacatatctatcattctctttcatataaaatacactaaa--gtcgtcaaaatcaccaaaatgcaaagtcactcaagtatttc 34765227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 28640246 - 28640118
Alignment:
Q  106 cggtgattttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatc 205  Q
    |||||||||||||| |||||||| ||| | ||||||||  ||||| ||||| | || ||||||||||||||||||||||||||||||||| ||| |||||    
T  28640246 cggtgattttggtgactttgtctctatctttctcctaataaataactctcttttatcaaaataatttattttaatcattcatctatcattctctttcatc 28640147  T
Q  206 taaaatactctaaattgtcacaaaagtcacc 236  Q
    |||||||| |||||  ||||| |||||||||    
T  28640146 taaaatacactaaa--gtcaccaaagtcacc 28640118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 21835972 - 21836123
Alignment:
Q  107 ggtgattttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatct 206  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||| |   |||| |||||||||||||||||||| ||||||||||  ||||||| |||    
T  21835972 ggtgattttggtgactttgtctctatctctttcctaaccaataatttttcctcatcaaaataatttattttaatcactcatctatca--ttctctcttct 21836069  T
Q  207 aaaatactctaaattgtcacaaaagtcaccaaaatacaaaatcactcaagtatttc 262  Q
     |||||| |||||  ||||  |||||||| ||||| || |||||||||||||||||    
T  21836070 gaaatacactaaa--gtcatcaaagtcacgaaaatgcagaatcactcaagtatttc 21836123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 1208617 - 1208692
Alignment:
Q  122 tttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcatttt 197  Q
    ||||||| ||| |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcattaaaataatttattttaatcactcatctatcatttt 1208692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 23395962 - 23396023
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  23395962 attctctatcatctaaataatttattttaatcattcatttatcattctctctcatctaaaat 23396023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 32832671 - 32832594
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||||| |||||| | ||||||| ||||  ||||||||||||||||||||||||| | |||| |||||||||||||||    
T  32832671 tctctcttaaccattcattctctctcatctaaataatttattttaatcattcatccaacattctctctcatctaaaat 32832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 13772873 - 13772777
Alignment:
Q  123 ttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    |||||| ||| ||||||||||| ||||||| ||| |||| ||||| ||||| |||||||| |||||||| ||| | | ||||||||||||| |||||    
T  13772873 ttgtctatatctctctcctaacgaataattttctctcatcaaaatgatttaatttaatcactcatctattattctttttcatctaaaatacactaaa 13772777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 6752122 - 6752075
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  6752122 aaataatttattttaatcattcatttatcattctctctcatctaaaat 6752075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 14818694 - 14818759
Alignment:
Q  107 ggtgattttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataattt 172  Q
    ||||| ||||||| |||||||| ||| |||||| |||||||||||||||| |||| ||||||||||    
T  14818694 ggtgactttggtgactttgtctctatctctctcataaccaataattctctctcatcaaaataattt 14818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 39729015 - 39729076
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| ||||  ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  39729015 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 39729076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 41069735 - 41069674
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| ||||  ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  41069735 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 41069674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 40204775 - 40204727
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  40204775 aaataatttattttaataattcatctatcattctctctcatgtaaaata 40204727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 13477771 - 13477688
Alignment:
Q  130 tatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    |||||||||| ||| |||| | ||||| ||||| |||||| |||||||||||||||||  |||||| ||||| ||| |||||||    
T  13477771 tatttctctcttaatcaatcagtctctctcatttaaataaattattttaatcattcattcatcattctctcttatccaaaatac 13477688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 8209317 - 8209359
Alignment:
Q  145 caataattctctatcattaaaataatttattttaatcattcat 187  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  8209317 caataattctctctcatcaaaataatttattttaatcattcat 8209359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 38529928 - 38529873
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    ||||||||||||||||||||||||  || ||| ||||||||||| |||||| ||||    
T  38529928 aaataatttattttaatcattcataaattattatctctcatctagaatactttaaa 38529873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 11226146 - 11226236
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||||| | ||| |||||| |||| | | ||||||| ||||  ||||||||||||||||||||||||   ||||| |||||||| ||||||    
T  11226146 ctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcatttaaaat 11226236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 5455871 - 5455915
Alignment:
Q  140 ctaaccaataattctctatcattaaaataatttattttaatcatt 184  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||    
T  5455871 ctaacaaataattctctctcaccaaaataatttattttaatcatt 5455915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 39267307 - 39267263
Alignment:
Q  174 ttttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||    
T  39267307 ttttaatcatatatctatcattttctcttatctaaaatacactaa 39267263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 3622298 - 3622155
Alignment:
Q  116 ggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactc 215  Q
    |||| |||||||| ||| ||||| ||||||||||||| ||| |||| |||||||||||||||||||| || | ||||||| || |||||||||||||| |    
T  3622298 ggtgactttgtctctatctctcttctaaccaataattttctctcatcaaaataatttattttaatcactcgtatatcattctcactcatctaaaatacac 3622199  T
Q  216 taaattgtcacaaaagtcaccaaaatacaaaatcactcaagtattt 261  Q
    ||||   | || ||||||||||||||  ||| ||||||||||||||    
T  3622198 taaa--attaccaaagtcaccaaaatgtaaagtcactcaagtattt 3622155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 9956624 - 9956694
Alignment:
Q  138 tcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaa 208  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| |||| |||||| |||||||||||||    
T  9956624 tcctaaccaataattctctctcatcaaaataatttattttaatcactcatttatcatcttctctcatctaa 9956694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 19824613 - 19824675
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| ||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  19824613 attctctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaata 19824675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 33953152 - 33953225
Alignment:
Q  145 caataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    |||||||||||| ||||  ||||||||||||||||| ||||||| | |||| ||||||||||||||||| ||||    
T  33953152 caataattctctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaatacactaa 33953225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 34928837 - 34928884
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  34928837 aaataatttattttaatcattcatttatcattctctctcatctaaaat 34928884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 14281858 - 14281809
Alignment:
Q  164 aaataatttattttaat-cattcatctatcattttctctcatctaaaata 212  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  14281858 aaataatttattttaatacattcatctatcattctctctcatctaaaata 14281809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 17250558 - 17250474
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatc 205  Q
    |||||||| ||| ||| | |||| |||| ||| ||| |||| ||||||||||| ||||||||||||||||||||| ||| |||||    
T  17250558 ctttgtctctatctctattctaatcaatcattttctctcatcaaaataatttactttaatcattcatctatcattctctttcatc 17250474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 22029898 - 22029850
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  22029898 aaataatttattttaatcattcatccaacattctctctcatctaaaata 22029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 28975577 - 28975656
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatact 214  Q
    ||||||||||||||| ||| | ||| || |||||||||||||||||||||| || ||||||||||| ||||| || |||||    
T  28975577 tctctcctaaccaatcatttt-tattatcaaaataatttattttaatcatttatttatcattttctttcatcaaatatact 28975656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 32821924 - 32821988
Alignment:
Q  129 ttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatca 193  Q
    |||| |||||| ||| ||||  |||| ||||||||||||||||||||||||||||| ||||||||    
T  32821924 ttatatctctcttaatcaatctttctttatcattaaaataatttattttaatcattaatctatca 32821988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 18623634 - 18623597
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctct 201  Q
    |||||||||||||||||||||||||||||||| |||||    
T  18623634 aaataatttattttaatcattcatctatcattctctct 18623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 22658864 - 22658917
Alignment:
Q  158 tcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||| ||||||||||||||||||||||||  |||||| ||| |||||||||||    
T  22658864 tcatttaaataatttattttaatcattcattcatcattctctttcatctaaaat 22658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 33922905 - 33922856
Alignment:
Q  169 atttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||| ||||    
T  33922905 atttattttaatcattcatttatcattctctctcatctagaatacactaa 33922856  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 37484836 - 37484885
Alignment:
Q  141 taaccaataattctctatcattaaaataatttattttaatcattcatcta 190  Q
    |||| ||||||| ||| |||| ||||||||||||||||||||||||||||    
T  37484836 taactaataattttctttcatcaaaataatttattttaatcattcatcta 37484885  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 3622423 - 3622320
Alignment:
Q  116 ggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactc 215  Q
    |||| |||| ||| ||| ||||| ||||| |||| || | | |||| |||||||||||||||||| | || | ||||||| |||||||| |||||||| |    
T  3622423 ggtgactttatctctatctctcttctaacaaatagttatttctcatcaaaataatttattttaattactcgtatatcattctctctcatataaaatacac 3622324  T
Q  216 taaa 219  Q
    ||||    
T  3622323 taaa 3622320  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 14151990 - 14151943
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||||||||||||||  || ||| |||||||||||||||    
T  14151990 aaataatttattttaatcattcattcattattatctctcatctaaaat 14151943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 8230867 - 8230771
Alignment:
Q  122 tttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    ||||||| ||| |||||||||| |||||| | | | |||| |||||||||||||||||||||| |   |||| | ||| ||||||||||||| |||||    
T  8230867 tttgtctctatctctctcctaatcaataacttt-tctcatcaaaataatttattttaatcatttaatcatcactctctttcatctaaaatacactaaa 8230771  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 27554971 - 27554923
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| ||||||||| ||| ||  |||||||||||||||||||||||    
T  27554971 aaataatctattttaattatttattcatcattttctctcatctaaaata 27554923  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 19431481 - 19431383
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    |||||| | ||| |||||| |||||||| ||||||| ||||  ||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||    
T  19431481 ctttgtgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaatacactaaa 19431383  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 3950373 - 3950296
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||||| ||| |||| ||||||| |||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  3950373 tctctcttaatcaattattctctttcatcaaaataatttattttaatcattcatcgatcattctctctcatctaaaat 3950296  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 46325688 - 46325584
Alignment:
Q  114 ttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    |||||| |||||||| ||  |||||| ||| |||| ||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  46325688 ttggtgactttgtctctaactctctcataatcaatcattctctctcatcaaaataacttattttaatcattcatctatcattctctctcatc-aaaatac 46325590  T
Q  214 tctaaa 219  Q
     |||||    
T  46325589 actaaa 46325584  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 33939672 - 33939589
Alignment:
Q  136 tctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||   | || ||||| |||||| |||||| |||||    
T  33939672 tctcctaaccaataattctttatcattaaaataatttattttaatcattcaatcaccactttctttcatcttaaatacactaaa 33939589  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 11872279 - 11872181
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    |||||| | ||| |||||| |||||||||||||||| |||| ||||||||||||| ||||||||||   |||||| ||| ||||||||||||| |||||    
T  11872279 ctttgtttctatatctctcataaccaataattctctctcatcaaaataatttattataatcattcaatcatcattctctttcatctaaaatacactaaa 11872181  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 44448576 - 44448492
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    |||||||||| |||| ||| | | ||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||    
T  44448576 tctctcctaatcaatcattttatctcatttaaataatttattttaatcattcatatatcattctctcccatctaaaatacactaa 44448492  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 46325408 - 46325497
Alignment:
Q  114 ttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatc 205  Q
    |||||| |||||||| ||| |||||| ||| |||| |||||||  ||| |||||||||||||||||||||||||||||||||  ||||||||    
T  46325408 ttggtgactttgtctctatctctctcataatcaatcattctct--catcaaaataatttattttaatcattcatctatcattccctctcatc 46325497  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 17368487 - 17368389
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    |||||||| | | ||| ||||||||||||||||||| |||| |||||||||||||||||| |||||   |||| | ||| ||||||||||||| |||||    
T  17368487 ctttgtctctgtctctttcctaaccaataattctctctcatcaaaataatttattttaattattcaatcatcactctctttcatctaaaatacactaaa 17368389  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 26056777 - 26056888
Alignment:
Q  111 attttggtggctttgtctttatttctctcctaac---caataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatcta 207  Q
    |||||| || |||||||||||| ||||| |||||    | ||||||||| | ||||||||||||||||||||| ||| |||||||| | | |||||||||    
T  26056777 attttgatgactttgtctttatctctcttctaacaagtagtaattctcttttattaaaataatttattttaattatttatctatcactctatctcatcta 26056876  T
Q  208 aaatactctaaa 219  Q
    |||||| |||||    
T  26056877 aaatacactaaa 26056888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 48915047 - 48914986
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| |||| |||||||||||||||||||||||||  |||||| |||||||||||||||    
T  48915047 attctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48914986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 48915438 - 48915377
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| |||| |||||||||||||||||||||||||  |||||| |||||||||||||||    
T  48915438 attctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48915377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 49315830 - 49315741
Alignment:
Q  116 ggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatc 205  Q
    |||| |||||||| ||| |||||| ||| |||||||| | | |||| |||||||||||||||||||| ||||||| |||| |||||||||    
T  49315830 ggtgactttgtctctatctctctcataatcaataattatatttcatcaaaataatttattttaatcactcatctaccattctctctcatc 49315741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 7537082 - 7537002
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatca 193  Q
    ||||||| |||||||| ||| ||||||||||||||| | ||||| | || |||||||||||||||||||||| || |||||    
T  7537082 tttggtgactttgtctctatctctctcctaaccaatcactctcttttatcaaaataatttattttaatcatttatatatca 7537002  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 24671171 - 24671246
Alignment:
Q  136 tctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||| |||||| | ||||||| ||||| ||||||||||||||||||||||||  |||| | |||||||||||||||    
T  24671171 tctcttaaccactcattctctctcatttaaataatttattttaatcattcattcatcactctctctcatctaaaat 24671246  T

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Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 49177438 - 49177483
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaa 210  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  49177438 aaataatttattttaatcattcatc-atcattttctctcatctaaaa 49177483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 4213939 - 4213839
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| |||||||| | | ||||| | || |||||||| ||| |  | |||||||||||||||||||| |||| |||| || ||||||||||||||||    
T  4213939 tttggtgactttgtctctgtctctcttccaatcaataattatctcttctcaaaataatttattttaatcactcatatatcgttctctctcatctaaaata 4213840  T
Q  213 c 213  Q
    |    
T  4213839 c 4213839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 37719044 - 37719107
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcatt 184  Q
    |||||||| ||| | ||||||||||||||||| ||| |||| |||||||||||||||| |||||    
T  37719044 ctttgtctatatctttctcctaaccaataattatctctcatcaaaataatttattttattcatt 37719107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 31108830 - 31108760
Alignment:
Q  116 ggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattca 186  Q
    |||| |||||||| | | ||||||||||||||||||| |||  ||| |||||| |||||||||||||||||    
T  31108830 ggtgcctttgtctctgtctctctcctaaccaataattttctcacatcaaaatagtttattttaatcattca 31108760  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 48915237 - 48915178
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| |||| |||||||||||||||||||||||||  ||||  ||||||||||||||||    
T  48915237 attctctctcatcaaaataatttattttaatcattcattcatca--ttctctcatctaaaat 48915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 4347504 - 4347451
Alignment:
Q  122 tttgtctttatttctctcctaaccaataattctctatcattaaaataatttatt 175  Q
    ||||||||||| ||||| ||||| ||||||||||| |||| |||||||||||||    
T  4347504 tttgtctttatatctcttctaactaataattctctttcatcaaaataatttatt 4347451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 6286457 - 6286498
Alignment:
Q  152 tctctatcattaaaataatttattttaatcattcatctatca 193  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  6286457 tctctatcattaaaataatatattttaatcattcatcaatca 6286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 15106251 - 15106287
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctc 200  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15106251 aaataatttattttaatcattcatctatcattctctc 15106287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 34430054 - 34430119
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaag 231  Q
    ||||||||||||||||||||||||||| | || | ||||||||||||| | ||||  |||||||||||    
T  34430054 aaataatttattttaatcattcatctaactttctttctcatctaaaatgcactaa--tgtcacaaaag 34430119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 19456372 - 19456311
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| ||||  ||||||||||||||||||||  ||  |||||| |||||||||||||||    
T  19456372 attctctctcatctaaataatttattttaatcatctattcatcattctctctcatctaaaat 19456311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 26478599 - 26478652
Alignment:
Q  158 tcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||| |||| |||||||||||| ||||||  |||||| |||||||||||||||    
T  26478599 tcatttaaatgatttattttaattattcattcatcattctctctcatctaaaat 26478652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 50176006 - 50175961
Alignment:
Q  168 aatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||||||    
T  50176006 aatttattttaatcattcattcatcttttcctctcatctaaaatac 50175961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 45781221 - 45781257
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctc 200  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  45781221 aaataatttattttaatcattcatccatcattatctc 45781257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 34305804 - 34305885
Alignment:
Q  138 tcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    ||||||| |||||  |||| |||| |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  34305804 tcctaacaaataagcctctctcatcaaaataatatattttaatcactcatctatcattctctctcatctaaaatactctaaa 34305885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 10688608 - 10688698
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||||| | ||| |||||| |||| | | ||||||| ||||  ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  10688608 ctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 10688698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 52404685 - 52404758
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattca 186  Q
    ||||||| |||||||| ||| |||||||||| |||||||| | | |||| |||||||||||||||||| |||||    
T  52404685 tttggtgtctttgtctctatctctctcctaatcaataattatttttcatcaaaataatttattttaattattca 52404758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 20345072 - 20345118
Alignment:
Q  142 aaccaataattctctatcattaaaataatttattttaatcattcatc 188  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  20345072 aaccaatcattctctctcatttaaataatttattttaatcattcatc 20345118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 16278780 - 16278865
Alignment:
Q  129 ttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatact 214  Q
    |||| |||||| ||| |||| ||||| |||||   ||||||||||||||||| ||||||| |||||| | ||| ||||||||||||    
T  16278780 ttatctctctcttaatcaattattctttatcacctaaataatttattttaattattcatccatcattctttcttatctaaaatact 16278865  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 19138476 - 19138401
Alignment:
Q  117 gtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatc 192  Q
    |||| ||||||||||| ||| |||| |||||| ||||| | |||| |||||||||| | ||||||||| |||||||    
T  19138476 gtgggtttgtctttatgtctgtccttaccaatcattctttctcatcaaaataatttgtattaatcatttatctatc 19138401  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 39485518 - 39485471
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||||||||||||||| | | || |||||||||||||||    
T  39485518 aaataatttattttaatcattcatccaaccttctctctcatctaaaat 39485471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 43170465 - 43170419
Alignment:
Q  149 aattctctatcattaaaataatttattttaatcattcatctatcatt 195  Q
    |||| ||| ||||||||||||||||||||||||| || |||||||||    
T  43170465 aattatctttcattaaaataatttattttaatcactcctctatcatt 43170419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 7654554 - 7654639
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaa-taatttattttaatcattcatctatcattttctctcatc 205  Q
    ||||||| |||| | | |||||| |||| ||||||| |||| |||| |||| ||| ||||||||||||||| |||| |||||||||    
T  7654554 ctttgtcattatctttttcctaatcaatcattctctctcatgaaaaataatatatattaatcattcatctaccattctctctcatc 7654639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 42681914 - 42681853
Alignment:
Q  134 tctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcatt 195  Q
    ||||||||| ||||||||| |||   || |||||||||||||||||| | ||||||||||||    
T  42681914 tctctcctagccaataattatcttctatcaaaataatttattttaattactcatctatcatt 42681853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 46348454 - 46348393
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| ||||| ||||| ||||| ||||| ||||||  |||||| |||||||||||||||    
T  46348454 attctctctcatttaaatagtttatcttaataattcattcatcattctctctcatctaaaat 46348393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 30240875 - 30240939
Alignment:
Q  128 tttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatc 192  Q
    ||||| |||||| ||| |||| | ||||| |||| ||||||||||||||||||||| ||| ||||    
T  30240875 tttatctctctcttaatcaattaatctctctcatcaaaataatttattttaatcatccatttatc 30240939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 39972992 - 39973056
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattc 185  Q
    |||||| | ||| |||||| |||| | | ||||||| |||| |||||||||||||||||||||||    
T  39972992 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattc 39973056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 27311879 - 27311776
Alignment:
Q  107 ggtgattttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatct 206  Q
    ||||||||||||| ||||  || ||| |||||| |||| |||||||||||  ||| ||||||| |||||||||||||||||||||||   ||||||||||    
T  27311879 ggtgattttggtgactttaactctatctctctcttaactaataattctctcacatcaaaataaattattttaatcattcatctatca--ctctctcatct 27311782  T
Q  207 aaaata 212  Q
    ||||||    
T  27311781 aaaata 27311776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 42691170 - 42691095
Alignment:
Q  111 attttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattca 186  Q
    |||| |||| |||||||| ||| ||||||||||  ||||||||||| |||| ||||||||||||||||||||||||    
T  42691170 atttgggtgcctttgtctctatctctctcctaattaataattctctctcatcaaaataatttattttaatcattca 42691095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 32204785 - 32204839
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaatactctaa 218  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  32204785 aaataatttattttaatcatttatctatcatcttctctcatctaaaatacactaa 32204839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 42971742 - 42971643
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    ||||||| |||||| | ||| |||||| ||||||  |||||||| ||||  ||||||||||||||||||||||  | | |||| ||||||||||||||||    
T  42971742 tttggtgcctttgtttctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcattcgcccaacattctctctcatctaaaata 42971643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 22715887 - 22715809
Alignment:
Q  141 taaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    |||| ||||||| ||| || | |||||||||||||||||||||| |||||||| | ||| ||||||||||||| |||||    
T  22715887 taacaaataattttctctcgtcaaaataatttattttaatcatttatctatcactctctttcatctaaaatacactaaa 22715809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 32279353 - 32279295
Alignment:
Q  153 ctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||| ||||| ||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  32279353 ctctctcatttaaataatttattttaattattcattcatcattttctctcatctaaaat 32279295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 33957527 - 33957481
Alignment:
Q  166 ataatttattttaatcattcatctatcattttctctcatctaaaata 212  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  33957527 ataatttattttaatcattcatctatcattctttctcatctaaaata 33957481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 38701606 - 38701532
Alignment:
Q  113 tttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcat 187  Q
    ||||||| |||||| | ||| ||||| ||||||||||||||||| |||| ||||||||| |||||||||| ||||    
T  38701606 tttggtgactttgtttctatatctcttctaaccaataattctctttcatcaaaataattaattttaatcactcat 38701532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 43279245 - 43279282
Alignment:
Q  158 tcattaaaataatttattttaatcattcatctatcatt 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43279245 tcattaaaataatttattttaatcattcatctatcatt 43279282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 44309468 - 44309415
Alignment:
Q  160 attaaaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    ||||||||||||||||||||| ||| |||||||||||||| | |||||||||||    
T  44309468 attaaaataatttattttaattatttatctatcattttctttaatctaaaatac 44309415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 11369103 - 11369056
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||||||||||| ||| | |||| |||||||||||||||    
T  11369103 aaataatttattttaatcatttatccaacattctctctcatctaaaat 11369056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 23021210 - 23021258
Alignment:
Q  163 aaaataatttattttaatcattcatctatcattttctctcatctaaaatac 213  Q
    |||||||||||||||||||||| ||||||||   |||||||||||||||||    
T  23021210 aaaataatttattttaatcatttatctatca--ctctctcatctaaaatac 23021258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 37685238 - 37685191
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||||||||||||||||||||| | |||| |||||| ||||||||    
T  37685238 aaataatttattttaatcattcatccaacattctctctcgtctaaaat 37685191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 8685962 - 8686004
Alignment:
Q  177 taatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  8685962 taatcattcatccatcattttttctcatctaaaatacactaaa 8686004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 30061240 - 30061154
Alignment:
Q  114 ttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctc 200  Q
    |||||| | |||| ||||| |||||  ||| |||||||| ||| ||||  ||||||||||||||||||||  ||| |||||||||||    
T  30061240 ttggtgacattgtttttatctctctgttaatcaataattttctctcatctaaataatttattttaatcatctatcaatcattttctc 30061154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 40591039 - 40591105
Alignment:
Q  145 caataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    |||| ||||||| ||||  ||||||||||||||||||||| ||||| |||| | | |||||||||||    
T  40591039 caattattctctttcatctaaataatttattttaatcatttatctaacattctatttcatctaaaat 40591105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 2628498 - 2628437
Alignment:
Q  150 attctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaat 211  Q
    ||||||| ||||  ||||| ||||||||||||||| ||  |||||| |||||||||||||||    
T  2628498 attctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaat 2628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 19699882 - 19699927
Alignment:
Q  145 caataattctctatcattaaaataatttattttaatcattcatcta 190  Q
    |||||||  ||| |||| ||||||||||||||||||||||||||||    
T  19699882 caataatattctctcatcaaaataatttattttaatcattcatcta 19699927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 43368534 - 43368497
Alignment:
Q  164 aaataatttattttaatcattcatctatcattttctct 201  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  43368534 aaataatttattttaatcattcatccatcattctctct 43368497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 9488818 - 9488770
Alignment:
Q  164 aaataatttattttaatcattcatctatcatt-ttctctcatctaaaat 211  Q
    ||||||||||||||||||||||||  |||||| | ||||||||||||||    
T  9488818 aaataatttattttaatcattcattcatcattctcctctcatctaaaat 9488770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 30880527 - 30880455
Alignment:
Q  121 ctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatca 193  Q
    |||| ||||||| |||||| ||| |||| ||| |||  ||| |||||||||||||||||| |||||| |||||    
T  30880527 ctttatctttatctctctcataatcaatcattatctcacatcaaaataatttattttaataattcatttatca 30880455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 31591 - 31669
Alignment:
Q  141 taaccaataattctctatcattaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaa 219  Q
    |||||||| ||| | ||||||  |||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||    
T  31591 taaccaatcattttttatcatctaaataatttattttaatcattcatctattattctctctcgtctaaaatacactaaa 31669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 263846 - 263758
Alignment:
Q  107 ggtgattttggtggctttgtctttatttctctcctaaccaataattctctatcattaaaataatttattttaatcattcatctatcatt 195  Q
    |||||| ||| || |||||| ||||| ||| ||||||||||| | | ||| | || |||| |||||||||||||||||||| |||||||    
T  263846 ggtgatattgatgactttgtttttatctctttcctaaccaatcactttctcttatcaaaagaatttattttaatcattcatgtatcatt 263758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 8154 - 8121
Alignment:
Q  162 taaaataatttattttaatcattcatctatcatt 195  Q
    |||||||||||||||||||||||||| |||||||    
T  8154 taaaataatttattttaatcattcatttatcatt 8121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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