View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0661_low_16 (Length: 392)

Name: NF0661_low_16
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0661_low_16
NF0661_low_16
[»] chr8 (27 HSPs)
chr8 (46-200)||(35398081-35398235)
chr8 (211-275)||(43800806-43800870)
chr8 (235-276)||(38746993-38747034)
chr8 (236-276)||(20697542-20697582)
chr8 (236-276)||(22215134-22215174)
chr8 (211-276)||(25099411-25099476)
chr8 (236-276)||(36859251-36859291)
chr8 (211-276)||(39733724-39733789)
chr8 (235-276)||(14911787-14911828)
chr8 (211-275)||(25100252-25100316)
chr8 (213-276)||(35160306-35160369)
chr8 (239-276)||(5838282-5838319)
chr8 (240-276)||(284845-284881)
chr8 (240-276)||(630996-631032)
chr8 (240-276)||(816808-816844)
chr8 (211-268)||(2773627-2773684)
chr8 (211-268)||(12208804-12208861)
chr8 (211-268)||(12453232-12453289)
chr8 (211-268)||(18146340-18146397)
chr8 (236-272)||(35057341-35057377)
chr8 (211-276)||(40529499-40529564)
chr8 (211-268)||(43150250-43150307)
chr8 (213-268)||(3512471-3512526)
chr8 (213-268)||(45069863-45069918)
chr8 (235-268)||(29725763-29725796)
chr8 (236-276)||(5574625-5574665)
chr8 (236-268)||(35019510-35019542)
[»] chr7 (39 HSPs)
chr7 (48-210)||(11378170-11378334)
chr7 (48-210)||(11375006-11375158)
chr7 (74-210)||(12652411-12652547)
chr7 (211-276)||(42329059-42329124)
chr7 (211-276)||(43156566-43156631)
chr7 (211-275)||(27826707-27826771)
chr7 (211-275)||(28494313-28494377)
chr7 (235-276)||(42265309-42265350)
chr7 (211-276)||(6243865-6243930)
chr7 (235-275)||(43337655-43337695)
chr7 (213-276)||(4060352-4060415)
chr7 (213-276)||(28958158-28958221)
chr7 (235-276)||(35647438-35647479)
chr7 (235-276)||(46672528-46672569)
chr7 (236-276)||(46350872-46350912)
chr7 (211-268)||(46534406-46534463)
chr7 (211-276)||(46536120-46536185)
chr7 (159-198)||(12647064-12647103)
chr7 (235-272)||(25696055-25696092)
chr7 (235-272)||(28235307-28235344)
chr7 (211-273)||(31031933-31031995)
chr7 (236-276)||(42328200-42328241)
chr7 (235-272)||(48935257-48935294)
chr7 (236-272)||(14792157-14792193)
chr7 (211-268)||(21920840-21920897)
chr7 (211-268)||(30582669-30582726)
chr7 (211-268)||(35670398-35670455)
chr7 (211-268)||(40061161-40061218)
chr7 (213-268)||(6476926-6476981)
chr7 (238-276)||(29994252-29994290)
chr7 (213-268)||(37658159-37658214)
chr7 (235-268)||(1602024-1602057)
chr7 (235-268)||(39870065-39870098)
chr7 (236-268)||(981360-981392)
chr7 (236-268)||(1602170-1602202)
chr7 (147-195)||(17168248-17168296)
chr7 (236-268)||(36121454-36121486)
chr7 (211-268)||(46349928-46349985)
chr7 (240-276)||(46615715-46615751)
[»] chr5 (32 HSPs)
chr5 (211-276)||(6789650-6789715)
chr5 (211-276)||(24171363-24171428)
chr5 (211-276)||(34589962-34590027)
chr5 (211-276)||(41734305-41734370)
chr5 (211-275)||(15498643-15498707)
chr5 (211-275)||(29525358-29525422)
chr5 (211-275)||(37530782-37530846)
chr5 (211-275)||(42709309-42709373)
chr5 (235-276)||(11784229-11784270)
chr5 (235-276)||(16218344-16218385)
chr5 (211-276)||(10815061-10815126)
chr5 (211-276)||(12280779-12280844)
chr5 (213-276)||(36761062-36761125)
chr5 (235-276)||(76436-76477)
chr5 (235-272)||(5050142-5050179)
chr5 (239-276)||(7615038-7615075)
chr5 (236-272)||(17540284-17540320)
chr5 (211-276)||(27813037-27813102)
chr5 (235-276)||(12939918-12939959)
chr5 (235-276)||(12953868-12953909)
chr5 (235-276)||(13359517-13359558)
chr5 (235-272)||(25881529-25881566)
chr5 (235-276)||(35638786-35638827)
chr5 (211-268)||(1923945-1924002)
chr5 (211-276)||(42422805-42422870)
chr5 (235-268)||(3033415-3033448)
chr5 (235-272)||(17645328-17645365)
chr5 (235-268)||(20017350-20017383)
chr5 (235-268)||(35766581-35766614)
chr5 (211-268)||(8520495-8520552)
chr5 (213-266)||(11575622-11575675)
chr5 (240-276)||(23590666-23590702)
[»] chr4 (37 HSPs)
chr4 (211-276)||(6238186-6238251)
chr4 (211-276)||(55001780-55001845)
chr4 (211-275)||(19801900-19801964)
chr4 (212-276)||(43374594-43374658)
chr4 (211-275)||(53284005-53284069)
chr4 (213-276)||(39840231-39840294)
chr4 (235-276)||(45561352-45561393)
chr4 (211-276)||(33984086-33984151)
chr4 (236-276)||(47633880-47633920)
chr4 (211-275)||(49335228-49335292)
chr4 (235-273)||(37114473-37114511)
chr4 (235-276)||(2943688-2943729)
chr4 (236-273)||(19800949-19800986)
chr4 (235-276)||(20356737-20356778)
chr4 (211-268)||(202288-202345)
chr4 (211-276)||(44448445-44448510)
chr4 (211-268)||(14269867-14269924)
chr4 (211-268)||(19912671-19912728)
chr4 (212-272)||(37498202-37498262)
chr4 (213-268)||(30411296-30411351)
chr4 (211-266)||(43590532-43590587)
chr4 (235-273)||(44525977-44526015)
chr4 (213-268)||(48953030-48953085)
chr4 (235-268)||(7113559-7113592)
chr4 (235-268)||(7113633-7113666)
chr4 (235-268)||(49648864-49648897)
chr4 (235-272)||(54683619-54683656)
chr4 (236-268)||(1771884-1771916)
chr4 (211-268)||(10658927-10658984)
chr4 (211-268)||(10873072-10873129)
chr4 (240-268)||(30653525-30653553)
chr4 (236-276)||(32012570-32012610)
chr4 (211-268)||(45549651-45549708)
chr4 (236-268)||(49646048-49646080)
chr4 (211-268)||(50792460-50792517)
chr4 (236-268)||(55496081-55496113)
chr4 (211-268)||(55610661-55610718)
[»] chr2 (27 HSPs)
chr2 (211-276)||(11018068-11018133)
chr2 (211-276)||(30523607-30523672)
chr2 (211-275)||(12160951-12161015)
chr2 (212-276)||(39241197-39241261)
chr2 (235-276)||(34245268-34245309)
chr2 (235-276)||(36936109-36936150)
chr2 (211-275)||(1876070-1876134)
chr2 (237-275)||(7454556-7454594)
chr2 (213-276)||(16496652-16496715)
chr2 (213-276)||(42519714-42519777)
chr2 (235-276)||(38324260-38324301)
chr2 (236-276)||(8875696-8875736)
chr2 (211-266)||(24520264-24520319)
chr2 (235-276)||(5774115-5774156)
chr2 (211-269)||(10361391-10361449)
chr2 (235-272)||(43496184-43496221)
chr2 (239-272)||(43568389-43568422)
chr2 (240-276)||(14958147-14958183)
chr2 (211-268)||(42097956-42098013)
chr2 (212-268)||(33178960-33179016)
chr2 (213-268)||(14452300-14452355)
chr2 (235-268)||(6432192-6432225)
chr2 (235-268)||(18109759-18109792)
chr2 (235-268)||(36600959-36600992)
chr2 (235-268)||(38928534-38928567)
chr2 (211-268)||(8341199-8341256)
chr2 (211-268)||(45376907-45376964)
[»] chr1 (26 HSPs)
chr1 (211-276)||(27747605-27747670)
chr1 (211-275)||(30358072-30358136)
chr1 (211-275)||(39325609-39325673)
chr1 (213-276)||(50586215-50586278)
chr1 (235-276)||(38815585-38815626)
chr1 (235-276)||(46315724-46315765)
chr1 (211-275)||(45900167-45900231)
chr1 (213-276)||(11823584-11823647)
chr1 (235-276)||(47326620-47326661)
chr1 (211-276)||(1190179-1190244)
chr1 (211-268)||(2459690-2459747)
chr1 (99-196)||(15329629-15329725)
chr1 (239-276)||(28955591-28955628)
chr1 (239-276)||(38624094-38624131)
chr1 (211-268)||(3796008-3796065)
chr1 (211-268)||(5698124-5698181)
chr1 (236-276)||(12014665-12014705)
chr1 (211-268)||(14390420-14390477)
chr1 (211-268)||(41865285-41865342)
chr1 (213-268)||(4640137-4640192)
chr1 (235-268)||(44109976-44110009)
chr1 (235-268)||(44299988-44300021)
chr1 (211-268)||(5698506-5698563)
chr1 (236-272)||(25365783-25365819)
chr1 (211-264)||(30899470-30899523)
chr1 (240-276)||(36739580-36739616)
[»] scaffold0060 (1 HSPs)
scaffold0060 (211-275)||(57886-57950)
[»] chr6 (16 HSPs)
chr6 (211-275)||(24119276-24119340)
chr6 (211-276)||(13756356-13756421)
chr6 (211-276)||(20645656-20645721)
chr6 (235-275)||(21860256-21860296)
chr6 (211-276)||(22707289-22707354)
chr6 (235-276)||(25023491-25023532)
chr6 (235-276)||(20992301-20992342)
chr6 (235-272)||(21459044-21459081)
chr6 (211-268)||(1789785-1789842)
chr6 (211-268)||(15508347-15508404)
chr6 (211-268)||(18368778-18368835)
chr6 (211-276)||(21778122-21778187)
chr6 (236-265)||(12130504-12130533)
chr6 (211-268)||(4976522-4976579)
chr6 (211-268)||(18801698-18801755)
chr6 (213-266)||(32562457-32562510)
[»] chr3 (38 HSPs)
chr3 (211-275)||(8321468-8321532)
chr3 (211-275)||(41991721-41991785)
chr3 (235-276)||(1361693-1361734)
chr3 (213-275)||(34436012-34436074)
chr3 (211-272)||(19274728-19274789)
chr3 (211-276)||(30317980-30318045)
chr3 (235-276)||(48051016-48051057)
chr3 (211-276)||(12055551-12055616)
chr3 (235-276)||(8879386-8879427)
chr3 (235-272)||(9558900-9558937)
chr3 (235-276)||(36237858-36237899)
chr3 (235-268)||(46115010-46115043)
chr3 (211-268)||(12122925-12122982)
chr3 (236-276)||(52184863-52184903)
chr3 (213-276)||(2557938-2558001)
chr3 (235-277)||(17666637-17666679)
chr3 (213-268)||(32111604-32111659)
chr3 (213-268)||(42167376-42167431)
chr3 (213-272)||(52959292-52959351)
chr3 (236-266)||(54598215-54598245)
chr3 (235-268)||(7041752-7041785)
chr3 (235-268)||(12122218-12122251)
chr3 (235-272)||(17666824-17666861)
chr3 (235-268)||(22978101-22978134)
chr3 (235-268)||(32999701-32999734)
chr3 (235-276)||(35405561-35405602)
chr3 (235-268)||(36660180-36660213)
chr3 (235-268)||(42528100-42528133)
chr3 (235-268)||(43860748-43860781)
chr3 (235-268)||(48071998-48072031)
chr3 (235-276)||(51062932-51062973)
chr3 (239-276)||(54463492-54463529)
chr3 (211-268)||(12764669-12764726)
chr3 (240-276)||(30743050-30743086)
chr3 (236-268)||(32390158-32390190)
chr3 (211-268)||(34785922-34785979)
chr3 (211-268)||(40374552-40374609)
chr3 (211-268)||(41888807-41888864)
[»] scaffold0115 (2 HSPs)
scaffold0115 (211-268)||(4147-4204)
scaffold0115 (211-268)||(11887-11944)
[»] scaffold0076 (1 HSPs)
scaffold0076 (213-276)||(14227-14290)
[»] scaffold0007 (1 HSPs)
scaffold0007 (235-272)||(157655-157692)
[»] scaffold0330 (1 HSPs)
scaffold0330 (211-276)||(6989-7054)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 35398235 - 35398081
Alignment:
Q  46 cgagaaccctatcaacatcaaacaattttcttagaaaaagaaatcaaaattaaggaagtaaatttaaataaattatcatcattttagcatctacaaataa 145  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35398235 cgagaaccctgtcaacatcaaacaattttcttagaaaaagaaatcaaaattaaggaagtaaatttaaataaattatcatcattttagcatctacaaataa 35398136  T
Q  146 gacctcatgaatggtaagattttgaagcttaggacaatgttggagcacttctatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35398135 gacctcatgaatggtaagattttgaagcttaggacaatgttggagcacttctatt 35398081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 43800870 - 43800806
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  43800870 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 43800806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 38747034 - 38746993
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38747034 ctagcttatagcttgttggattagcttataagctcgttagat 38746993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 20697582 - 20697542
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20697582 tagcttatagcttgttggattagcttataagctcgttagat 20697542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 22215134 - 22215174
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22215134 tagcttatagcttgttggattagcttataagctcgttagat 22215174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 25099411 - 25099476
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||    
T  25099411 gctgtgtttggtaacacaaaaaagctagcttataacttgttggattagcttataagctcgttagat 25099476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 36859251 - 36859291
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36859251 tagcttatagcttgttggattagcttataagctcgttagat 36859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 39733724 - 39733789
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||    
T  39733724 gctgtgtttggtaacacaaaaaagctagcttataccttgttggattagcttataagctcgttagat 39733789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 14911787 - 14911828
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  14911787 ctagcttatagtttgttggattagcttataagctcgttagat 14911828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 25100316 - 25100252
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       ||||||||||||||||| | |||||||||||||||||||||    
T  25100316 gctgtgtttggtaacacaaaaaagctagcttatagcttgttagcttagcttataagctcgttaga 25100252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 35160369 - 35160306
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       |||||||||||||| ||||||||||||||||| |||||||||    
T  35160369 tgtgtttggtaacacaaaaaagctagcttatagcttattggattagcttataagttcgttagat 35160306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 5838282 - 5838319
Alignment:
Q  239 cttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||||||||||||||| |||||||    
T  5838282 cttatagcttgttggattagcttataagcttgttagat 5838319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 284845 - 284881
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||| |||||||||    
T  284845 ttatagcttgttggattagcttataagttcgttagat 284881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 631032 - 630996
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||| |||||||||    
T  631032 ttatagcttgttggattagcttataagttcgttagat 630996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 816844 - 816808
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||| |||||||||    
T  816844 ttatagcttgttggattagcttataagttcgttagat 816808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 2773684 - 2773627
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  2773684 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 2773627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 12208804 - 12208861
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  12208804 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 12208861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 12453232 - 12453289
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  12453232 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 12453289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 18146340 - 18146397
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  18146340 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 18146397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 35057377 - 35057341
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35057377 tagcttatagcttgttagattagcttataagctcgtt 35057341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 40529499 - 40529564
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||| | |||||||||||||| |||||||    
T  40529499 gctgtgtttggtaacacaaaaaagctagcttatagcttgtttgtttagcttataagcttgttagat 40529564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 43150250 - 43150307
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  43150250 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 43150307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 3512471 - 3512526
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||| |||||||||||||||||||    
T  3512471 tgtgtttggtaacacaaaaaagctagcttatagcttcttggattagcttataagct 3512526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 45069918 - 45069863
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  45069918 tgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 45069863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 29725763 - 29725796
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  29725763 ctagcttatagcttgttggactagcttataagct 29725796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 5574625 - 5574665
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||| |||||| |||| ||||||||||||||||||    
T  5574625 tagcttatagtttgttgaattaacttataagctcgttagat 5574665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 35019510 - 35019542
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||||||||| |||||||||||||    
T  35019510 tagcttatagcttgttggactagcttataagct 35019542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 11378334 - 11378170
Alignment:
Q  48 agaaccctatcaacatcaaacaattttcttagaaaaagaaatcaaaatta---aggaagtaaatttaaataaattatcatcattttagcatctacaaata 144  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||||||   |||||||| | ||||||||||||||||||||| |||||| | ||| |    
T  11378334 agaaccctgtcaacatcagacaattttcttagaacaagaaatcaaaattattaaggaagtagaattaaataaattatcatcattt-agcatcgagaaaca 11378236  T
Q  145 agacctcatgaatggtaagattttgaagcttaggacaatgttggagcacttctattaaccagttcc 210  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||||    
T  11378235 agacctcgtgaatggtaagattctgaagcttaggacaatgttggagcacttttgttaaccacttcc 11378170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 11375158 - 11375006
Alignment:
Q  48 agaaccctatcaacatcaaacaattttcttagaaaaagaaatcaaaattaaggaagtaaatttaaataaattatcatcattttagcatctacaaataaga 147  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||         ||    
T  11375158 agaaccctgtcaacatcagacaattttcttagaaaaagaaatcaaaattaaggaagtaaaattaaataaattatcatca-tttagaatc---------ga 11375069  T
Q  148 cctcatgaatggtaagattttgaagcttaggacaatgttggagcacttctattaaccagttcc 210  Q
    |||| |||||||||||||| |||||||||||||| || |||||||||||| ||||||| ||||    
T  11375068 cctcgtgaatggtaagattctgaagcttaggacagtggtggagcacttctgttaaccacttcc 11375006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 12652547 - 12652411
Alignment:
Q  74 tcttagaaaaagaaatcaaaattaaggaagtaaatttaaataaattatcatcattttagcatctacaaataagacctcatgaatggtaagattttgaagc 173  Q
    |||||||||||| ||||||||| | ||||| ||| |||||||||| ||||    ||||||||| |||||||||||||| |||||  ||||||| ||||||    
T  12652547 tcttagaaaaagtaatcaaaatgatggaagcaaaattaaataaatgatcaaatatttagcatcgacaaataagacctcgtgaataataagattctgaagc 12652448  T
Q  174 ttaggacaatgttggagcacttctattaaccagttcc 210  Q
    |||||||| ||||||||||||||||| ||||| ||||    
T  12652447 ttaggacagtgttggagcacttctatcaaccacttcc 12652411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 42329124 - 42329059
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  42329124 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 42329059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 43156566 - 43156631
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  43156566 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 43156631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 27826707 - 27826771
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  27826707 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 27826771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 28494377 - 28494313
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  28494377 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 28494313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 42265350 - 42265309
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42265350 ctagcttatagcttgttggattagcttataagctcgttagat 42265309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 6243865 - 6243930
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||    
T  6243865 gctgtgtttggtaacacaacaaagctagtttatagcttgttggattagcttataagctcgttagat 6243930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 43337655 - 43337695
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43337655 ctagcttatagcttgttggattagcttataagctcgttaga 43337695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 4060352 - 4060415
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  4060352 tgtgtttggtaacacaaaaaagctagcttatagtttgttggattagcttataagctcgttagat 4060415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 28958221 - 28958158
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||    
T  28958221 tgtgtttggtaacacaaaaaagctagcttatagcttgttggattaacttataagctcgttagat 28958158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 35647438 - 35647479
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  35647438 ctagcttatagcttgttggatttgcttataagctcgttagat 35647479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 46672528 - 46672569
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  46672528 ctagcttataacttgttggattagcttataagctcgttagat 46672569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 46350912 - 46350872
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  46350912 tagcttatagcttgttggattagtttataagctcgttagat 46350872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 46534406 - 46534463
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  46534406 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagct 46534463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 46536120 - 46536185
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||| ||||||||||||||||||||||| ||||||||||    
T  46536120 gctgtgtttggtaacacaaaaaagctagcttgtagcttgttggattagcttataaactcgttagat 46536185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 12647103 - 12647064
Alignment:
Q  159 gtaagattttgaagcttaggacaatgttggagcacttcta 198  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  12647103 gtaagattttgaagcttaggacaatgttcgagcacttcta 12647064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 25696055 - 25696092
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25696055 ctagcttatagcttgttagattagcttataagctcgtt 25696092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 28235307 - 28235344
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  28235307 ctagcttatagtttgttggattagcttataagctcgtt 28235344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 31031995 - 31031933
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgtta 273  Q
    |||||||||||||||||       |||| |||||||||||||||||| |||||||||||||||    
T  31031995 gctgtgtttggtaacacaaaaaagctagtttatagcttgttggattaacttataagctcgtta 31031933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 42328241 - 42328200
Alignment:
Q  236 tagcttata-gcttgttggattagcttataagctcgttagat 276  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  42328241 tagcttataagcttgttggattagcttataagctcgttagat 42328200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 48935257 - 48935294
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||||||||||| |||||||||||||    
T  48935257 ctagcttatagcttgttggattagtttataagctcgtt 48935294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 14792193 - 14792157
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14792193 tagcttatagcttgttagattagcttataagctcgtt 14792157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 21920897 - 21920840
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  21920897 gctgtgtttggtaacacaaataagctagcttatagcttgttggactagcttataagct 21920840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 30582669 - 30582726
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  30582669 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 30582726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 35670455 - 35670398
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  35670455 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 35670398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 40061161 - 40061218
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  40061161 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 40061218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 6476926 - 6476981
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||| |||||||||||||||||||    
T  6476926 tgtgtttggtaacacaaaaaagctagcttatagcttcttggattagcttataagct 6476981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 29994290 - 29994252
Alignment:
Q  238 gcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  29994290 gcttatagtttgttagattagcttataagctcgttagat 29994252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 37658214 - 37658159
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  37658214 tgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 37658159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 1602057 - 1602024
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  1602057 ctagcttatagcttgttggactagcttataagct 1602024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 39870098 - 39870065
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||| ||||||||||||||||||||||    
T  39870098 ctagcttatagtttgttggattagcttataagct 39870065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 981360 - 981392
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    |||||||||| ||||||||||||||||||||||    
T  981360 tagcttatagtttgttggattagcttataagct 981392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 1602202 - 1602170
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||||||||| |||||||||||||    
T  1602202 tagcttatagcttgttggactagcttataagct 1602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 17168248 - 17168296
Alignment:
Q  147 acctcatgaatggtaagattttgaagcttaggacaatgttggagcactt 195  Q
    |||||||||||||||||||||||||| || | ||||||||  |||||||    
T  17168248 acctcatgaatggtaagattttgaagtttggaacaatgtttcagcactt 17168296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 36121454 - 36121486
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||| |||||||||||||||||||    
T  36121454 tagcttatagcttattggattagcttataagct 36121486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 46349985 - 46349928
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||| |||||||| ||||||||||    
T  46349985 gctgtgtttggtaacacaaaaaagctagcttatagcttcttggattaacttataagct 46349928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 46615751 - 46615715
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  46615751 ttatagtttgttagattagcttataagctcgttagat 46615715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 6789715 - 6789650
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  6789715 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 6789650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 24171363 - 24171428
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  24171363 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 24171428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 34590027 - 34589962
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  34590027 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 34589962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 41734370 - 41734305
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  41734370 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 41734305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 15498643 - 15498707
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  15498643 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 15498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 29525422 - 29525358
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  29525422 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 29525358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 37530846 - 37530782
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  37530846 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 37530782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 42709309 - 42709373
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  42709309 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 42709373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 11784270 - 11784229
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11784270 ctagcttatagcttgttggattagcttataagctcgttagat 11784229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 16218385 - 16218344
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16218385 ctagcttatagcttgttggattagcttataagctcgttagat 16218344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 10815061 - 10815126
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  10815061 gctgtgtttggtaacacaaaaaagctagcttatagtttgttggattagcttataagctcgttagat 10815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 12280779 - 12280844
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  12280779 gctgtgtttggtaacacaaaaaagctagcttatagtttgttggattagcttataagctcgttagat 12280844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 36761062 - 36761125
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  36761062 tgtgtttggtaacacaaaaaagctagcttataggttgttggattagcttataagctcgttagat 36761125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 76436 - 76477
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  76436 ctagcttatagctttttggattagcttataagctcgttagat 76477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 5050179 - 5050142
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5050179 ctagcttatagcttgttggattagcttataagctcgtt 5050142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 7615075 - 7615038
Alignment:
Q  239 cttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7615075 cttatagcttgttggattagcttataagctcgttagat 7615038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 17540284 - 17540320
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||||||||||||||||||||||||    
T  17540284 tagcttatagcttgttggattagcttataagctcgtt 17540320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 27813102 - 27813037
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||||||||||||||||| ||||| |||||||||||||||||    
T  27813102 gctgtgtttggtaacacaaaaaagctagcttatagcttgttgaattagtttataagctcgttagat 27813037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 12939959 - 12939918
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  12939959 ctagcttataatttgttggattagcttataagctcgttagat 12939918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 12953909 - 12953868
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  12953909 ctagcttataatttgttggattagcttataagctcgttagat 12953868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 13359558 - 13359517
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  13359558 ctagcatatagcttgttggattagcttataagcttgttagat 13359517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 25881529 - 25881566
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25881529 ctagcttatagcttgttagattagcttataagctcgtt 25881566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 35638786 - 35638827
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  35638786 ctagcttatagtttgttggattaacttataagctcgttagat 35638827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 1923945 - 1924002
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  1923945 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 1924002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 42422805 - 42422870
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||| ||||||||||||| |||| ||||||||||||||||||    
T  42422805 gctgtgtttggtaacacaaaaaagctagtttatagcttgttgaattaacttataagctcgttagat 42422870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 3033415 - 3033448
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  3033415 ctagcttatagcttgttggactagcttataagct 3033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 17645328 - 17645365
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  17645328 ctagcttatagcttgttagattagcttataagttcgtt 17645365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 20017383 - 20017350
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  20017383 ctagcttatagcttgttggactagcttataagct 20017350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 35766581 - 35766614
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||| |||||||||||||||||||    
T  35766581 ctagcttatagcttcttggattagcttataagct 35766614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 8520495 - 8520552
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       ||| |||||||||||||||| |||||||||||||    
T  8520495 gctgtgtttggtaacacgaataagctaacttatagcttgttggactagcttataagct 8520552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 11575622 - 11575675
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataag 266  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||    
T  11575622 tgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataag 11575675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 23590666 - 23590702
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  23590666 ttataacttgttggattagcttataaactcgttagat 23590702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 6238186 - 6238251
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  6238186 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 6238251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 55001845 - 55001780
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  55001845 gctgtgtttggtaacacaaaaaaactagcttatagcttgttggattagcttataagctcgttagat 55001780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 19801964 - 19801900
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  19801964 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 19801900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 43374594 - 43374658
Alignment:
Q  212 ctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  43374594 ctgtgtttggtaacacaaaaatgctagcttatagcttgttggattagcttataagctcgttagat 43374658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 53284005 - 53284069
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  53284005 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 53284069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 39840294 - 39840231
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  39840294 tgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 39840231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 45561393 - 45561352
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45561393 ctagcttatagcttgttggattagcttataagctcgttagat 45561352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 33984086 - 33984151
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  33984086 gctgtgtttggtaacacaaaaaagctagcttatagcttgttgaattagcttataagctcgttagat 33984151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 47633920 - 47633880
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47633920 tagcttatagcttgttggattagcttataagctcgttagat 47633880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 49335292 - 49335228
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||    
T  49335292 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagttcgttaga 49335228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 37114511 - 37114473
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtta 273  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37114511 ctagcttatagcttgttggattagcttataagctcgtta 37114473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 2943729 - 2943688
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  2943729 ctagcttatagtttgttggattagcttataagctcgttagat 2943688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 19800949 - 19800986
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgtta 273  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19800949 tagcttatagcttgttggattagcttataagctcgtta 19800986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 20356778 - 20356737
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  20356778 ctagcttataacttgttggattagcttataagctcgttagat 20356737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 202288 - 202345
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  202288 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagct 202345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 44448445 - 44448510
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||| ||||||||||||||||||| ||||||||||||||||||    
T  44448445 gctgtgtttggtaacacaaaaaagctaacttatagcttgttggattaacttataagctcgttagat 44448510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 14269924 - 14269867
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  14269924 gctgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataagct 14269867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 19912671 - 19912728
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  19912671 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 19912728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 37498202 - 37498262
Alignment:
Q  212 ctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||       ||| ||||||| ||||||||||||||||||||||||||    
T  37498202 ctgtgtttggtaacacaaaaaggctaacttatagtttgttggattagcttataagctcgtt 37498262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 30411351 - 30411296
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  30411351 tgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 30411296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 43590532 - 43590587
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataag 266  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||    
T  43590532 gctgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataag 43590587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 44526015 - 44525977
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtta 273  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  44526015 ctagcttatagtttgttggattagcttataagttcgtta 44525977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 48953030 - 48953085
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  48953030 tgtgtttggtaacacggataagctagcttatagcttgttggactagcttataagct 48953085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 7113592 - 7113559
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  7113592 ctagcttatagcttgttggactagcttataagct 7113559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 7113666 - 7113633
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  7113666 ctagcttatagcttgttggactagcttataagct 7113633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 49648897 - 49648864
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  49648897 ctagcttatagcttgttggactagcttataagct 49648864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 54683619 - 54683656
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  54683619 ctagcttataacttgttagattagcttataagctcgtt 54683656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 1771916 - 1771884
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||||||||| |||||||||||||    
T  1771916 tagcttatagcttgttggactagcttataagct 1771884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 10658984 - 10658927
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||| ||||| |||||||||||||    
T  10658984 gctgtgtttggtaacacgaattagctagcttatagcttattggactagcttataagct 10658927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 10873129 - 10873072
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||| ||||| |||||||||||||    
T  10873129 gctgtgtttggtaacacgaattagctagcttatagcttattggactagcttataagct 10873072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 30653525 - 30653553
Alignment:
Q  240 ttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||||||||||||    
T  30653525 ttatagcttgttggattagcttataagct 30653553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 32012570 - 32012610
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||| |||||||||||||| | |||||||    
T  32012570 tagcttatagcttgttagattagcttataagtttgttagat 32012610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 45549651 - 45549708
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||  |||||||||||||    
T  45549651 gctgtgtttggtaacacaaaaaagctagcttatagcttgttgggctagcttataagct 45549708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 49646048 - 49646080
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||| |||||||||||||||||||||    
T  49646048 tagcttatagcctgttggattagcttataagct 49646080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 50792517 - 50792460
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||| ||||||||||||||| |||||||||||||    
T  50792517 gctgtgtttggtaacacgaataagctagtttatagcttgttggactagcttataagct 50792460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 55496113 - 55496081
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||||||||| |||||||||||||    
T  55496113 tagcttatagcttgttggactagcttataagct 55496081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 55610661 - 55610718
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||| | |||||||||||||    
T  55610661 gctgtgtttggtaacacaaaaaaactagcttatagcttgttgtactagcttataagct 55610718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 11018133 - 11018068
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  11018133 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 11018068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 30523607 - 30523672
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  30523607 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 30523672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 12161015 - 12160951
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  12161015 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 12160951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 39241261 - 39241197
Alignment:
Q  212 ctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  39241261 ctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 39241197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 34245268 - 34245309
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34245268 ctagcttatagcttgttggattagcttataagctcgttagat 34245309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 36936150 - 36936109
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36936150 ctagcttatagcttgttggattagcttataagctcgttagat 36936109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 1876134 - 1876070
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||    
T  1876134 gctgtgtttggtaacacaaaaaagctagcttatagtttgttggattagcttataagctcgttaga 1876070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 7454556 - 7454594
Alignment:
Q  237 agcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7454556 agcttatagcttgttggattagcttataagctcgttaga 7454594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 16496715 - 16496652
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||    
T  16496715 tgtgtttggtaacacaaaaaagctagcttatagcttgttggattagtttataagctcgttagat 16496652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 42519714 - 42519777
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  42519714 tgtgtttggtaacacaaaaaagctagcttatagcttgttgcattagcttataagctcgttagat 42519777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 38324260 - 38324301
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  38324260 ctagcttatagcttgttgaattagcttataagctcgttagat 38324301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 8875696 - 8875736
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  8875696 tagcttataacttgttggattagcttataagctcgttagat 8875736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 24520319 - 24520264
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataag 266  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  24520319 gctgtgtttggtaacacgaataagctagcttatagcttgttggattagcttataag 24520264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 5774115 - 5774156
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  5774115 ctagtttatagcttgttggattagcttataagcttgttagat 5774156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 10361391 - 10361449
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctc 269  Q
    |||||||||||||||||       |||||||||||||||||||| ||||||||||||||    
T  10361391 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagctc 10361449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 43496184 - 43496221
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||||| |||||||||||||||||||    
T  43496184 ctagcttatagcttgttgcattagcttataagctcgtt 43496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 43568389 - 43568422
Alignment:
Q  239 cttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||||||||||||||||||||    
T  43568389 cttatagcttgttggattagcttataagctcgtt 43568422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 14958147 - 14958183
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||| |||||||||||||||||    
T  14958147 ttatagcttgttggattagtttataagctcgttagat 14958183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 42098013 - 42097956
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||| |||||||||||||||||||    
T  42098013 gctgtgtttggtaacacaaaaaagctagcttatagcttcttggattagcttataagct 42097956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 33178960 - 33179016
Alignment:
Q  212 ctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  33178960 ctgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataagct 33179016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 14452300 - 14452355
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  14452300 tgtgtttggtaacacgaattagctagcttatagcttgttggactagcttataagct 14452355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 6432192 - 6432225
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  6432192 ctagcttatagcttgttggactagcttataagct 6432225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 18109792 - 18109759
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  18109792 ctagcttatagcttgttggactagcttataagct 18109759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 36600959 - 36600992
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  36600959 ctagcttatagcttgttggactagcttataagct 36600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 38928567 - 38928534
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  38928567 ctagcttatagcttgttggactagcttataagct 38928534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 8341256 - 8341199
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||| ||||||||| |||||||||||||    
T  8341256 gctgtgtttggtaacacaaataagctagcttataacttgttggactagcttataagct 8341199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 45376907 - 45376964
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||| ||||||||||||||| |||||||||||||    
T  45376907 gctgtgtttggtaacacaaataagctagtttatagcttgttggactagcttataagct 45376964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 27747605 - 27747670
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  27747605 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 27747670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 30358072 - 30358136
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  30358072 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 30358136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 39325609 - 39325673
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  39325609 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 39325673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 50586278 - 50586215
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  50586278 tgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttagat 50586215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 38815626 - 38815585
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38815626 ctagcttatagcttgttggattagcttataagctcgttagat 38815585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 46315765 - 46315724
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46315765 ctagcttatagcttgttggattagcttataagctcgttagat 46315724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 45900167 - 45900231
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||    
T  45900167 gctgtgtttggtaacacagaaaagctagtttatagcttgttggattagcttataagctcgttaga 45900231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 11823584 - 11823647
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||    
T  11823584 tgtgtttggtaacacaaaaaagctagtttatagcttgttggattagcttataagctcgttagat 11823647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 47326661 - 47326620
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  47326661 ctagcttatagtttgttggattagcttataagctcgttagat 47326620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 1190244 - 1190179
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||| ||||| |||||||||||||||||||||||||||||||    
T  1190244 gctgtgtttggtaacacaaaaaagctagtttataacttgttggattagcttataagctcgttagat 1190179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 2459747 - 2459690
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  2459747 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagct 2459690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 15329629 - 15329725
Alignment:
Q  99 ggaagtaaatttaaataaattatcatcattttagcatctacaaataagacctcatgaatggtaagattttgaagcttaggacaatgttggagcacttc 196  Q
    ||||||| | ||||||| ||||||| ||||| | ||||  | ||||||||||| ||||| |||||| | |||||||||||||| | ||||||||||||    
T  15329629 ggaagtataattaaatagattatcaacatttaa-catccgcgaataagacctcgtgaatagtaagactctgaagcttaggacagttttggagcacttc 15329725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 28955628 - 28955591
Alignment:
Q  239 cttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28955628 cttatagcttgttagattagcttataagctcgttagat 28955591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 38624094 - 38624131
Alignment:
Q  239 cttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  38624094 cttatagtttgttggattagcttataagctcgttagat 38624131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 3796065 - 3796008
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  3796065 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 3796008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 5698124 - 5698181
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  5698124 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 5698181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 12014665 - 12014705
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  12014665 tagcttataacttgttggattagtttataagctcgttagat 12014705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 14390420 - 14390477
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  14390420 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 14390477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 41865285 - 41865342
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||| |||||||||||||||||||    
T  41865285 gctgtgtttggtaacacaaaaaagctagcttatagcttcttggattagcttataagct 41865342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 4640192 - 4640137
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  4640192 tgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataagct 4640137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 44110009 - 44109976
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  44110009 ctagcttatagcttgttggactagcttataagct 44109976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 44300021 - 44299988
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  44300021 ctagcttatagcttgttggactagcttataagct 44299988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 5698506 - 5698563
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| || ||||||||||    
T  5698506 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactaacttataagct 5698563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 25365783 - 25365819
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  25365783 tagcttatagcttgttagattaacttataagctcgtt 25365819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 30899523 - 30899470
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttata 264  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||    
T  30899523 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttata 30899470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 36739580 - 36739616
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  36739580 ttatagtttgttggattaacttataagctcgttagat 36739616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 57950 - 57886
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  57950 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 57886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 24119340 - 24119276
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  24119340 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 24119276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 13756421 - 13756356
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||    
T  13756421 gctgtgtttggtaacacgaaaaagctagtttatagcttgttggattagcttataagctcgttagat 13756356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 20645656 - 20645721
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  20645656 gctgtgtttggtaacacaaaaaagctagcttatagtttgttggattagcttataagctcgttagat 20645721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 21860256 - 21860296
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21860256 ctagcttatagcttgttggattagcttataagctcgttaga 21860296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 22707289 - 22707354
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||    
T  22707289 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagtttataagctcgttagat 22707354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 25023532 - 25023491
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  25023532 ctagcttatagcttgttggattagcttataagcttgttagat 25023491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 20992342 - 20992301
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  20992342 ctagtttatagtttgttggattagcttataagctcgttagat 20992301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 21459044 - 21459081
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21459044 ctagcttatagcttgttagattagcttataagctcgtt 21459081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 1789785 - 1789842
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  1789785 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 1789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 15508347 - 15508404
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  15508347 gctgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataagct 15508404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 18368835 - 18368778
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  18368835 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 18368778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 21778187 - 21778122
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       |||| ||||||| |||||||||| ||||||||||||||||||    
T  21778187 gctgtgtttggtaacacaaaaaagctagtttatagcctgttggattaacttataagctcgttagat 21778122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 265
Target Start/End: Original strand, 12130504 - 12130533
Alignment:
Q  236 tagcttatagcttgttggattagcttataa 265  Q
    ||||||||||||||||||||||||||||||    
T  12130504 tagcttatagcttgttggattagcttataa 12130533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 4976522 - 4976579
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||| ||||||| |||||||||||||    
T  4976522 gctgtgtttggtaacacaaaaaaactagcttatagcctgttggactagcttataagct 4976579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 18801698 - 18801755
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| || ||||||||||    
T  18801698 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactaacttataagct 18801755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 32562510 - 32562457
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataag 266  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||    
T  32562510 tgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataag 32562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 8321532 - 8321468
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  8321532 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 8321468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 41991785 - 41991721
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  41991785 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 41991721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 1361693 - 1361734
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1361693 ctagcttatagcttgttggattagcttataagctcgttagat 1361734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 34436074 - 34436012
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttaga 275  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  34436074 tgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgttaga 34436012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 19274728 - 19274789
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  19274728 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagctcgtt 19274789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 30318045 - 30317980
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  30318045 gctgtgtttggtaacacaaaaatgctagcttatagtttgttggattagcttataagctcgttagat 30317980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 48051016 - 48051057
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  48051016 ctagcttatagcttgttggattaacttataagctcgttagat 48051057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 12055616 - 12055551
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||| ||||||||||||||||||||||| ||||||    
T  12055616 gctgtgtttggtaacacaaaaaagctagcttatagtttgttggattagcttataagctccttagat 12055551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 8879386 - 8879427
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  8879386 ctagcttatagtttgttggattagcttataagttcgttagat 8879427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 9558937 - 9558900
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  9558937 ctagcttatagcttgttagattagcttataagctcgtt 9558900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 36237858 - 36237899
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  36237858 ctagcttatagtttgttggattaacttataagctcgttagat 36237899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 46115010 - 46115043
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||||||||||||||||||||||||    
T  46115010 ctagcttatagcttgttggattagcttataagct 46115043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 12122982 - 12122925
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  12122982 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 12122925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 52184903 - 52184863
Alignment:
Q  236 tagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  52184903 tagcttatagcttgttagattaacttataagctcgttagat 52184863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 2558001 - 2557938
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       ||| ||||||||||||| ||||| ||||||||||||||||||    
T  2558001 tgtgtttggtaacacaaaaaagctaacttatagcttgtttgattaacttataagctcgttagat 2557938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 17666637 - 17666679
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagatc 277  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||    
T  17666637 ctagcttatagcttgttgaattagcttataagcttgttggatc 17666679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 32111659 - 32111604
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  32111659 tgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 32111604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 42167431 - 42167376
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  42167431 tgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataagct 42167376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 52959292 - 52959351
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||||       ||||||||||| ||||||||||| ||||||||||||||    
T  52959292 tgtgtttggtaacacaaataagctagcttatagtttgttggattaacttataagctcgtt 52959351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 266
Target Start/End: Original strand, 54598215 - 54598245
Alignment:
Q  236 tagcttatagcttgttggattagcttataag 266  Q
    |||||||||||||||||||||||||||||||    
T  54598215 tagcttatagcttgttggattagcttataag 54598245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 7041752 - 7041785
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  7041752 ctagcttatagcttgttggactagcttataagct 7041785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 12122251 - 12122218
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||| |||||||||||||||    
T  12122251 ctagcttatagcttgttgaattagcttataagct 12122218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 17666824 - 17666861
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  17666824 ctagcttatagcttattggattaacttataagctcgtt 17666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 22978101 - 22978134
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  22978101 ctagcttatagcttgttggactagcttataagct 22978134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 32999734 - 32999701
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||| |||||||||||||||||||    
T  32999734 ctagcttatagcttcttggattagcttataagct 32999701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 35405561 - 35405602
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||||||| |||||||||||| |||||| ||||||||||    
T  35405561 ctagcttatagtttgttggattagtttataaactcgttagat 35405602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 36660213 - 36660180
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||| ||||||||||||||||||||||    
T  36660213 ctagcttatagtttgttggattagcttataagct 36660180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 42528133 - 42528100
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  42528133 ctagcttatagcttgttggactagcttataagct 42528100  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 43860748 - 43860781
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  43860748 ctagcttatagcttgttggactagcttataagct 43860781  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 48071998 - 48072031
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||||| |||||||||||||    
T  48071998 ctagcttatagcttgttggactagcttataagct 48072031  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 51062932 - 51062973
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||| |||| |||||||| |||||||||    
T  51062932 ctagcttatagcttgttgaattatcttataagttcgttagat 51062973  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 54463529 - 54463492
Alignment:
Q  239 cttatagcttgttggattagcttataagctcgttagat 276  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  54463529 cttatagtttgttggattatcttataagctcgttagat 54463492  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 12764669 - 12764726
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||| ||||||||| |||||||||||||||||||    
T  12764669 gctgtgtttggtaacacaaaaaagctagtttatagctttttggattagcttataagct 12764726  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 30743086 - 30743050
Alignment:
Q  240 ttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||| |||||||||||||||||||||| |||||||    
T  30743086 ttatagtttgttggattagcttataagctggttagat 30743050  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 32390190 - 32390158
Alignment:
Q  236 tagcttatagcttgttggattagcttataagct 268  Q
    ||||||||||||||||||| |||||||||||||    
T  32390190 tagcttatagcttgttggactagcttataagct 32390158  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 34785979 - 34785922
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||| ||||| |||||||||||||    
T  34785979 gctgtgtttggtaacacacataagctagcttatagcttattggactagcttataagct 34785922  T

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Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 40374609 - 40374552
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       ||| |||||||||||||||| |||||||||||||    
T  40374609 gctgtgtttggtaacacaaaaaagctaacttatagcttgttggactagcttataagct 40374552  T

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Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 41888807 - 41888864
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       ||||||||||| |||||||| |||||||||||||    
T  41888807 gctgtgtttggtaacacgaataagctagcttatagtttgttggactagcttataagct 41888864  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 4147 - 4204
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  4147 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 4204  T

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Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 11887 - 11944
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagct 268  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  11887 gctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagct 11944  T

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Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 14290 - 14227
Alignment:
Q  213 tgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||       ||||||||||| || ||||||||| |||||||||||||||||    
T  14290 tgtgtttggtaacacaaaaaagctagcttatagtttattggattagattataagctcgttagat 14227  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 157692 - 157655
Alignment:
Q  235 ctagcttatagcttgttggattagcttataagctcgtt 272  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  157692 ctagcttatagtttgttagattagcttataagctcgtt 157655  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 6989 - 7054
Alignment:
Q  211 gctgtgtttggtaacacnnnnnnnctagcttatagcttgttggattagcttataagctcgttagat 276  Q
    |||||||||||||||||       ||||||||||| |||||| ||||||||||||  |||||||||    
T  6989 gctgtgtttggtaacacaaaaaagctagcttatagtttgttgaattagcttataaattcgttagat 7054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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