View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_19 (Length: 381)
Name: NF0661_low_19
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 20770196 - 20770449
Alignment:
| Q |
1 |
agttatggaaaacgctcatctctgatcccaccttcgtcaaaatgcccctgcaggtatctaatcgaaactcgcacctcgcacttcacatggacaacggata |
100 |
Q |
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| T |
20770196 |
agttatggaaaacgctcatctctgatcccaccttcgtcaaaatgcacctgcaggtatctaaacgaaactcgtacctcgcacttcacatggacaacggata |
20770295 |
T |
|
| Q |
101 |
tttcggatatacatataccgttgcacccatctctgtgagtcttttgctggggagtacgtcgaagcccatcacacatactggaaatcattacagccgattc |
200 |
Q |
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| T |
20770296 |
tttcggatatacatataccgttgcacccatctctgtgagtcttttgctggagagtacgtcgaagcccatcacacgtactggaaatcattacagccgattc |
20770395 |
T |
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| Q |
201 |
catgcccgttactgctgtgggattgttggttcgtgcaatggattgatctgtttg |
254 |
Q |
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| T |
20770396 |
catgcccgttactgttgtgggattgttggttcgtgcaatggattgatctatttg |
20770449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 20770444 - 20770491
Alignment:
| Q |
327 |
tatttgttggttggtctgtcatcgttataattgtcctcagaataatct |
374 |
Q |
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| T |
20770444 |
tatttgttggttggtctgtcatcgttataattgtcctcagaataatct |
20770491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 14075984 - 14076062
Alignment:
| Q |
16 |
tcatctctgatcccaccttcgtcaaaatgcccctgcaggtatctaatcgaaactcgcacctcgcacttcacatggacaa |
94 |
Q |
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| T |
14075984 |
tcatctctgatcccatattcatcaaaatgcaccttaagctatctgctcgaaacccacacctcgcacttcatatggacaa |
14076062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 14386012 - 14386090
Alignment:
| Q |
16 |
tcatctctgatcccaccttcgtcaaaatgcccctgcaggtatctaatcgaaactcgcacctcgcacttcacatggacaa |
94 |
Q |
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||||||||||||||| ||| ||||||||| ||| || ||||| ||||||| | |||||||||||||| |||||||| |
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| T |
14386012 |
tcatctctgatcccatattcatcaaaatgcaccttaagctatctgctcgaaacccacacctcgcacttcatatggacaa |
14386090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 29873906 - 29873938
Alignment:
| Q |
222 |
attgttggttcgtgcaatggattgatctgtttg |
254 |
Q |
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| T |
29873906 |
attgttggttcctgcaatggattgatctgtttg |
29873938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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