View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_21 (Length: 350)
Name: NF0661_low_21
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 21303232 - 21302923
Alignment:
| Q |
30 |
tgaatgacagaggatggatgaaaaattaatgttaatagtttattttttatccacctcattttt-cagaaatcaatgtactgaaataatctgactccctaa |
128 |
Q |
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| T |
21303232 |
tgaatgacagaggatggatgaaaaattaatgttaatagtttattttttatccacctcattttttcagaaatcaatgtactgaaataatccgactccctaa |
21303133 |
T |
|
| Q |
129 |
ctttttatttgttggttaaatcaataattaattgaatttgtttaatgaactaaaatgaatagagttgaagacattcaatcatataacttgtacattattt |
228 |
Q |
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| T |
21303132 |
ctttttatttgttggttaaatcaataattaattgaatttgtctaatgaactaaaatgaatagagttgaagacactcaatcatataacttgtacattattt |
21303033 |
T |
|
| Q |
229 |
gtgtttgtgattgcagattagctacatgataatattaaatacacaaagtatttaaaaacgattctgttaaatgtgacaagcctaaaaaattgcagcttca |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21303032 |
gtgtttgtgattgcagattagctacatgataatattaaatacacaaagtatttaaaaacgattctgttaaatgtgacaagcctctaaaattgcagcttca |
21302933 |
T |
|
| Q |
329 |
tcattcttca |
338 |
Q |
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|||||||||| |
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| T |
21302932 |
tcattcttca |
21302923 |
T |
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