View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0661_low_23 (Length: 335)

Name: NF0661_low_23
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0661_low_23
NF0661_low_23
[»] scaffold0090 (1 HSPs)
scaffold0090 (93-304)||(18042-18254)
[»] chr5 (14 HSPs)
chr5 (94-304)||(38144507-38144716)
chr5 (94-274)||(19512261-19512441)
chr5 (94-274)||(28370055-28370234)
chr5 (99-279)||(22751021-22751201)
chr5 (161-279)||(23528573-23528690)
chr5 (210-274)||(18407944-18408008)
chr5 (219-298)||(22438723-22438803)
chr5 (210-274)||(23111200-23111264)
chr5 (219-304)||(42961566-42961651)
chr5 (259-304)||(1856452-1856497)
chr5 (259-304)||(21674422-21674467)
chr5 (220-275)||(19236900-19236955)
chr5 (222-275)||(22461158-22461211)
chr5 (222-275)||(22467782-22467835)
[»] chr3 (29 HSPs)
chr3 (92-272)||(24192828-24193009)
chr3 (94-275)||(23370505-23370686)
chr3 (94-274)||(9534203-9534382)
chr3 (99-274)||(14762758-14762933)
chr3 (99-272)||(20247791-20247964)
chr3 (99-272)||(38310802-38310975)
chr3 (165-298)||(16801444-16801576)
chr3 (192-285)||(41455087-41455178)
chr3 (191-275)||(24933828-24933910)
chr3 (213-274)||(18929239-18929300)
chr3 (210-274)||(17240513-17240577)
chr3 (94-192)||(55499185-55499283)
chr3 (220-275)||(13302240-13302295)
chr3 (220-275)||(13323787-13323842)
chr3 (259-304)||(24122228-24122273)
chr3 (200-275)||(10389443-10389518)
chr3 (200-275)||(10414532-10414607)
chr3 (200-275)||(10421202-10421277)
chr3 (220-275)||(12033444-12033499)
chr3 (220-275)||(13312896-13312951)
chr3 (220-275)||(17131732-17131787)
chr3 (220-275)||(51301589-51301644)
chr3 (260-298)||(18127695-18127733)
chr3 (260-298)||(18135465-18135503)
chr3 (259-304)||(13967769-13967814)
chr3 (259-304)||(13973244-13973289)
chr3 (260-288)||(14543478-14543506)
chr3 (260-288)||(16829104-16829132)
chr3 (260-288)||(16837626-16837654)
[»] scaffold0025 (1 HSPs)
scaffold0025 (92-272)||(14398-14579)
[»] chr7 (27 HSPs)
chr7 (94-278)||(14422859-14423043)
chr7 (99-279)||(18873240-18873420)
chr7 (99-274)||(15168055-15168230)
chr7 (99-270)||(10895795-10895966)
chr7 (94-274)||(16009452-16009631)
chr7 (99-285)||(12709833-12710019)
chr7 (99-285)||(13122904-13123090)
chr7 (134-285)||(13743623-13743774)
chr7 (175-272)||(16677250-16677348)
chr7 (175-272)||(17651486-17651584)
chr7 (161-285)||(12590633-12590756)
chr7 (161-285)||(13007374-13007497)
chr7 (219-324)||(21230910-21231015)
chr7 (219-274)||(11382871-11382926)
chr7 (219-274)||(11389348-11389403)
chr7 (219-298)||(20311026-20311107)
chr7 (211-274)||(13679485-13679548)
chr7 (219-303)||(148619-148703)
chr7 (220-275)||(2971254-2971309)
chr7 (220-275)||(20906461-20906516)
chr7 (220-274)||(11311059-11311113)
chr7 (239-280)||(831628-831669)
chr7 (239-280)||(1196808-1196849)
chr7 (260-317)||(14945066-14945123)
chr7 (260-317)||(15372659-15372716)
chr7 (239-280)||(34958578-34958619)
chr7 (218-274)||(46625961-46626017)
[»] scaffold0247 (1 HSPs)
scaffold0247 (99-324)||(11221-11446)
[»] chr1 (12 HSPs)
chr1 (94-274)||(20437024-20437204)
chr1 (161-298)||(41111977-41112112)
chr1 (210-274)||(32651563-32651627)
chr1 (210-274)||(18712790-18712854)
chr1 (219-274)||(19663517-19663572)
chr1 (218-274)||(20805320-20805376)
chr1 (219-274)||(11158093-11158148)
chr1 (218-272)||(10811785-10811839)
chr1 (220-275)||(20851132-20851187)
chr1 (220-275)||(20857759-20857814)
chr1 (220-275)||(21706276-21706331)
chr1 (220-275)||(21710818-21710873)
[»] chr6 (23 HSPs)
chr6 (94-285)||(10986170-10986361)
chr6 (94-320)||(18800312-18800538)
chr6 (94-274)||(23839073-23839253)
chr6 (94-274)||(4477732-4477912)
chr6 (132-298)||(29614124-29614291)
chr6 (99-274)||(23057818-23057993)
chr6 (155-285)||(930085-930215)
chr6 (161-298)||(12168305-12168440)
chr6 (161-298)||(19785847-19785982)
chr6 (161-298)||(19878398-19878533)
chr6 (161-285)||(19287214-19287337)
chr6 (161-298)||(19884174-19884309)
chr6 (191-275)||(34639986-34640069)
chr6 (191-275)||(34646660-34646743)
chr6 (219-324)||(24512794-24512899)
chr6 (191-275)||(25469704-25469785)
chr6 (94-272)||(21565214-21565392)
chr6 (203-275)||(31252406-31252478)
chr6 (222-274)||(9187498-9187550)
chr6 (218-274)||(25348486-25348542)
chr6 (218-272)||(25598643-25598697)
chr6 (218-274)||(25397172-25397228)
chr6 (218-274)||(19471335-19471391)
[»] scaffold0026 (2 HSPs)
scaffold0026 (94-275)||(111561-111741)
scaffold0026 (99-285)||(11840-12026)
[»] scaffold0924 (1 HSPs)
scaffold0924 (151-285)||(740-875)
[»] scaffold0553 (1 HSPs)
scaffold0553 (94-275)||(10195-10376)
[»] scaffold0544 (1 HSPs)
scaffold0544 (94-275)||(1525-1706)
[»] scaffold0029 (1 HSPs)
scaffold0029 (99-298)||(111761-111960)
[»] chr2 (17 HSPs)
chr2 (106-298)||(26583715-26583904)
chr2 (94-274)||(6483593-6483772)
chr2 (94-274)||(6487060-6487239)
chr2 (94-274)||(19661454-19661633)
chr2 (191-275)||(5706023-5706106)
chr2 (171-274)||(23265093-23265197)
chr2 (171-274)||(23280161-23280265)
chr2 (94-272)||(23878883-23879060)
chr2 (171-274)||(21908311-21908414)
chr2 (94-274)||(23101463-23101643)
chr2 (94-272)||(23089057-23089235)
chr2 (260-304)||(6260142-6260186)
chr2 (176-284)||(26885139-26885246)
chr2 (218-274)||(24661576-24661632)
chr2 (220-275)||(10577-10632)
chr2 (220-275)||(25180929-25180984)
chr2 (267-304)||(19665044-19665081)
[»] chr8 (15 HSPs)
chr8 (94-275)||(44477498-44477678)
chr8 (94-275)||(44492656-44492836)
chr8 (94-272)||(8727735-8727913)
chr8 (99-285)||(23866494-23866680)
chr8 (161-285)||(17054533-17054656)
chr8 (94-304)||(27940822-27941034)
chr8 (210-274)||(23482053-23482117)
chr8 (218-274)||(18614271-18614327)
chr8 (219-324)||(14056514-14056619)
chr8 (219-324)||(25111976-25112081)
chr8 (218-274)||(39364919-39364975)
chr8 (220-274)||(29643386-29643440)
chr8 (220-275)||(24320670-24320725)
chr8 (259-304)||(30765880-30765925)
chr8 (218-274)||(21931696-21931752)
[»] scaffold1773 (1 HSPs)
scaffold1773 (99-282)||(1058-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (99-282)||(50059-50241)
[»] scaffold0154 (1 HSPs)
scaffold0154 (201-324)||(30839-30962)
[»] scaffold0058 (1 HSPs)
scaffold0058 (134-298)||(206-368)
[»] chr4 (12 HSPs)
chr4 (99-285)||(8045822-8046007)
chr4 (99-298)||(11847987-11848191)
chr4 (191-275)||(53483677-53483760)
chr4 (219-324)||(15408139-15408244)
chr4 (218-274)||(8834895-8834951)
chr4 (218-274)||(13888641-13888697)
chr4 (220-272)||(14486661-14486713)
chr4 (218-274)||(15245215-15245271)
chr4 (218-269)||(22724691-22724742)
chr4 (260-296)||(1650182-1650219)
chr4 (239-280)||(15747551-15747592)
chr4 (218-274)||(15308120-15308176)
[»] scaffold0117 (2 HSPs)
scaffold0117 (99-285)||(1887-2072)
scaffold0117 (99-285)||(8564-8749)
[»] scaffold0456 (2 HSPs)
scaffold0456 (204-279)||(916-991)
scaffold0456 (204-279)||(8061-8136)
[»] scaffold0796 (2 HSPs)
scaffold0796 (161-280)||(1727-1845)
scaffold0796 (161-280)||(5750-5868)
[»] scaffold0129 (1 HSPs)
scaffold0129 (191-281)||(45268-45357)
[»] scaffold0107 (1 HSPs)
scaffold0107 (219-324)||(40482-40587)
[»] scaffold0019 (1 HSPs)
scaffold0019 (219-324)||(135473-135578)
[»] scaffold0235 (1 HSPs)
scaffold0235 (221-324)||(22543-22646)
[»] scaffold0476 (1 HSPs)
scaffold0476 (94-272)||(3295-3474)
[»] scaffold0310 (1 HSPs)
scaffold0310 (219-298)||(17643-17723)
[»] scaffold0222 (1 HSPs)
scaffold0222 (210-274)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (210-274)||(116887-116951)
[»] scaffold0461 (1 HSPs)
scaffold0461 (210-274)||(8-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (210-274)||(13623-13687)
[»] scaffold0077 (1 HSPs)
scaffold0077 (94-272)||(3624-3802)
[»] scaffold0020 (1 HSPs)
scaffold0020 (210-274)||(101928-101992)
[»] scaffold0124 (1 HSPs)
scaffold0124 (219-274)||(34276-34331)
[»] scaffold0815 (1 HSPs)
scaffold0815 (223-285)||(1453-1515)
[»] scaffold2054 (1 HSPs)
scaffold2054 (185-285)||(680-780)
[»] scaffold0138 (1 HSPs)
scaffold0138 (218-274)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (211-274)||(1378-1441)
[»] scaffold0139 (2 HSPs)
scaffold0139 (219-274)||(14997-15052)
scaffold0139 (260-298)||(26892-26930)
[»] scaffold0001 (1 HSPs)
scaffold0001 (197-284)||(493019-493105)
[»] scaffold0261 (1 HSPs)
scaffold0261 (220-285)||(23559-23624)
[»] scaffold0790 (1 HSPs)
scaffold0790 (253-285)||(5487-5519)
[»] scaffold0609 (1 HSPs)
scaffold0609 (203-275)||(5857-5929)
[»] scaffold0348 (2 HSPs)
scaffold0348 (260-324)||(14604-14668)
scaffold0348 (220-275)||(9336-9391)
[»] scaffold0096 (1 HSPs)
scaffold0096 (218-278)||(39503-39563)
[»] scaffold0127 (1 HSPs)
scaffold0127 (220-275)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (220-275)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (220-274)||(1913-1967)
[»] scaffold0067 (3 HSPs)
scaffold0067 (260-298)||(46708-46746)
scaffold0067 (260-288)||(55733-55761)
scaffold0067 (260-288)||(62119-62147)
[»] scaffold0249 (2 HSPs)
scaffold0249 (267-304)||(2219-2256)
scaffold0249 (200-275)||(13894-13970)
[»] scaffold0335 (1 HSPs)
scaffold0335 (218-274)||(2628-2684)
[»] scaffold0005 (1 HSPs)
scaffold0005 (260-288)||(266108-266136)


Alignment Details
Target: scaffold0090 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 93 - 304
Target Start/End: Original strand, 18042 - 18254
Alignment:
Q  93 cataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaaccct-aaccctcaatt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| || ||| |||||||||||    
T  18042 cataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgttagaatcatcattaaaccttaaccctcaatt 18141  T
Q  192 tattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaatta 291  Q
    |||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||    
T  18142 tattttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaatgatta 18241  T
Q  292 cacagcacaatcg 304  Q
    |||| ||||||||    
T  18242 cacaacacaatcg 18254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 94 - 304
Target Start/End: Complemental strand, 38144716 - 38144507
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| |||||||||  ||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||    
T  38144716 atagattaagttttcattctaaacattacattacaat-agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 38144618  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattac 292  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  38144617 attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaatgattac 38144519  T
Q  293 acagcacaatcg 304  Q
    ||||||||||||    
T  38144518 acagcacaatcg 38144507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 19512261 - 19512441
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| || ||||||  ||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||    
T  19512261 atagattaagttttcattctaaacattacgttacaat-agaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 19512359  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19512360 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 28370234 - 28370055
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||    
T  28370234 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 28370136  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28370135 attttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 99 - 279
Target Start/End: Original strand, 22751021 - 22751201
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  22751021 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 22751119  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 279  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  22751120 tccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 23528573 - 23528690
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 23528670  T
Q  260 ctcacccttaccttagtttt 279  Q
    ||||||||||||||||||||    
T  23528671 ctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 22438803 - 22438723
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag-ttttgcagaagaattacacagca 298  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 22438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 42961566 - 42961651
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||| ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacagcacaatcg 42961651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 1856497 - 1856452
Alignment:
Q  259 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  1856497 tctcacccttaccttagttttgcagaaagattaaacagcacaatcg 1856452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 21674467 - 21674422
Alignment:
Q  259 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  21674467 tctcacccttaccttagttttgcagaaagattaaacagcacaatcg 21674422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  222 ttttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  222 ttttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 92 - 272
Target Start/End: Original strand, 24192828 - 24193009
Alignment:
Q  92 gcataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaa 189  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||    
T  24192828 gcatagattaagttttcattctgaacatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa 24192926  T
Q  190 tttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24192927 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 23370686 - 23370505
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| ||||||    
T  23370686 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 23370588  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  23370587 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 9534203 - 9534382
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||  |||||||| ||||||| ||||||||||||||||    
T  9534203 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccctcaattt 9534301  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9534302 attttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 14762933 - 14762758
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  14762933 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 14762835  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14762834 tccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 20247964 - 20247791
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  | ||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  20247964 ttaagttttcattctgaacattatattacaagaa-aattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 20247866  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20247865 tccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 38310975 - 38310802
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  38310975 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 38310877  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  38310876 tccaaaa-ctatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 16801576 - 16801444
Alignment:
Q  165 aatcgtcatcaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcac 264  Q
    |||| ||||||||||||||| |||||||  | | ||||| ||| ||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  16801576 aatcatcatcaaccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcac 16801478  T
Q  265 ccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||| |||||||||||    
T  16801477 ccttaccttagttttgcagaaggattacacagca 16801444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 41455178 - 41455087
Alignment:
Q  192 tattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 24933910 - 24933828
Alignment:
Q  191 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24933910 ttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  213 ttaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 55499283 - 55499185
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatc-aaccctaaccctcaattt 192  Q
    |||| ||||| |||||||| | |||||||||||||| || ||||||||||| || ||||  ||||| |||||||| ||||| ||||||||||||||||||    
T  55499283 atagattaagatttcattccgaacatcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt 55499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 24122273 - 24122228
Alignment:
Q  259 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  24122273 tctcacccttaccttagttttgcagaaagattaaacagcacaatcg 24122228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 10389518 - 10389443
Alignment:
Q  200 aaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||| ||||||| | | ||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  10389518 aaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 10414607 - 10414532
Alignment:
Q  200 aaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||| ||||||| | | ||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  10414607 aaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 10421277 - 10421202
Alignment:
Q  200 aaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||| ||||||| | | ||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  10421277 aaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    |||||||| |||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||| | ||||||||||||   ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 18127733 - 18127695
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||||||| || |||||||||    
T  18127733 ctcacccttaccttagttttgcagaaaaaatacacagca 18127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 18135503 - 18135465
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||||||| || |||||||||    
T  18135503 ctcacccttaccttagttttgcagaaaaaatacacagca 18135465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 13967814 - 13967769
Alignment:
Q  259 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||||||||||  || | ||||||||||||    
T  13967814 tctcacccttaccttagttttgcagaaagataaaacagcacaatcg 13967769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 13973289 - 13973244
Alignment:
Q  259 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||||||||||  || | ||||||||||||    
T  13973289 tctcacccttaccttagttttgcagaaagataaaacagcacaatcg 13973244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 14543506 - 14543478
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaa 288  Q
    |||||||||||||||||||||||||||||    
T  14543506 ctcacccttaccttagttttgcagaagaa 14543478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 16829132 - 16829104
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaa 288  Q
    |||||||||||||||||||||||||||||    
T  16829132 ctcacccttaccttagttttgcagaagaa 16829104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 16837654 - 16837626
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaa 288  Q
    |||||||||||||||||||||||||||||    
T  16837654 ctcacccttaccttagttttgcagaagaa 16837626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 92 - 272
Target Start/End: Complemental strand, 14579 - 14398
Alignment:
Q  92 gcataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaa 189  Q
    |||||| |||||||||||||| | |||||||||||||| |||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||    
T  14579 gcatagattaagttttcattcggaacatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa 14481  T
Q  190 tttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14480 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 94 - 278
Target Start/End: Original strand, 14422859 - 14423043
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||    
T  14422859 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 14422957  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttt 278  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14422958 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 99 - 279
Target Start/End: Original strand, 18873240 - 18873420
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  18873240 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 18873338  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 279  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  18873339 tccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 15168055 - 15168230
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  15168055 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 15168153  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  15168154 tccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 99 - 270
Target Start/End: Complemental strand, 10895966 - 10895795
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttatttt 197  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| |||||||| ||    
T  10895966 ttaagttttcattctgaacattatattacaag-agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatctt 10895868  T
Q  198 ccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttac 270  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  10895867 ccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 16009452 - 16009631
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaaccct-aaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||| ||||| ||||||    
T  16009452 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaacccacaattt 16009550  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    || |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16009551 atcttccaaaacc-atgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 12710019 - 12709833
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    ||||||||  |||||| |||| | |||||||| ||||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||    
T  12710019 ttaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattt 12709920  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    ||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  12709919 tccaaaa-ctatgcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 13123090 - 13122904
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    ||||||||  |||||| |||| | |||||||| ||||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||    
T  13123090 ttaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattt 13122991  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    ||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13122990 tccaaaa-ctatgcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 134 - 285
Target Start/End: Original strand, 13743623 - 13743774
Alignment:
Q  134 aattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaa 231  Q
    ||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||    
T  13743623 aattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-caggaa 13743720  T
Q  232 ttatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13743721 ttataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 16677250 - 16677348
Alignment:
Q  175 aaccctaaccctcaattt-attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  16677250 aaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 17651486 - 17651584
Alignment:
Q  175 aaccctaaccctcaattt-attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17651486 aaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 12590756 - 12590633
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  12590756 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 12590659  T
Q  260 ctcacccttaccttagttttgcagaa 285  Q
    ||||||||||||||||||||||||||    
T  12590658 ctcacccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 13007374 - 13007497
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 13007471  T
Q  260 ctcacccttaccttagttttgcagaa 285  Q
    ||||||||||||||||||||||||||    
T  13007472 ctcacccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 21231015 - 21230910
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 318  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||  ||| ||||||| ||||| ||  ||||||||     
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 21230916  T
Q  319 ctctct 324  Q
    ||||||    
T  21230915 ctctct 21230910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 20311107 - 20311026
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag--ttttgcagaagaattacacagca 298  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||  ||||||||||  ||| |||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaaagattgcacagca 20311026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  211 aattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||| |||||||||| |||||||| || ||||| ||| | ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 148619 - 148703
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatc 303  Q
    |||||||||||||  ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  |||||||| |||||||    
T  148619 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacaacacaatc 148703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||| ||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  239 ttatgattattaagagatagtctcacccttaccttagttttg 280  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  239 ttatgattattaagagatagtctcacccttaccttagttttg 280  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 14945123 - 14945066
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctct 317  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||| ||  ||||||||    
T  14945123 ctcacccttaccttagatttgcagaagaaatgcacagcaaaatcggttcctaggctct 14945066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 15372716 - 15372659
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctct 317  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||| ||  ||||||||    
T  15372716 ctcacccttaccttagatttgcagaagaaatgcacagcaaaatcggttcctaggctct 15372659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  239 ttatgattattaagagatagtctcacccttaccttagttttg 280  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||| ||||||||| ||||| || ||| |||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 324
Target Start/End: Original strand, 11221 - 11446
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatt-tattt 196  Q
    ||||| ||||||| || |||||||||||||| |||||||||||||| || |||   |||||  ||||||| ||||||| ||||||||||||||| |||||    
T  11221 ttaagatttcattttgaacatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattt 11319  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacag 296  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  11320 tcc-aaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaggattacacag 11418  T
Q  297 cacaatcgtttaataggctctcctctct 324  Q
    || ||||| ||  |||||||| ||||||    
T  11419 caaaatcggttcctaggctcttctctct 11446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 20437204 - 20437024
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||| |||| ||||||||| || ||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||    
T  20437204 atagattaagttttcattctgaacattacattacaa-cataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 20437106  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20437105 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 41111977 - 41112112
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 41112074  T
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  41112075 ctcacccttaccttagttttgcagaa-aattagacagca 41112112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 285
Target Start/End: Complemental strand, 10986361 - 10986170
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||    
T  10986361 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 10986263  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  10986262 atcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 320
Target Start/End: Original strand, 18800312 - 18800538
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatt- 191  Q
    |||| ||||| ||||||| || |||||||||||||| |||||||||||||| || |||   |||||  ||||||| ||||||| |||||||||||||||     
T  18800312 atagattaagatttcattttgaacatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattc 18800410  T
Q  192 tattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaatta 291  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  18800411 tattttcc-aaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcagaaggatta 18800509  T
Q  292 cacagcacaatcgtttaataggctctcct 320  Q
    ||||||| ||||| ||  |||||||||||    
T  18800510 cacagcaaaatcggttcctaggctctcct 18800538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 23839073 - 23839253
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| | |||||| ||||||| ||||||||||||||||    
T  23839073 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccctcaattt 23839171  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23839172 atcttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 4477732 - 4477912
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||| ||||| || ||||  ||||| |||||||| ||||||| ||||||||| ||||||    
T  4477732 atagattaagttttcattctaaacattacattacaa-cagaattagcatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 4477830  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4477831 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 132 - 298
Target Start/End: Complemental strand, 29614291 - 29614124
Alignment:
Q  132 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 229  Q
    ||||||||||||| || |||| ||||||| ||| |||| ||||||| ||||||||||||||||||||| | |||| ||||||| ||||||||||||||||    
T  29614291 agaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaattttcaga 29614192  T
Q  230 aattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  29614191 aattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 29614124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 23057818 - 23057993
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  23057818 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 23057916  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  23057917 tccaaaa-ctatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 930215 - 930085
Alignment:
Q  155 ttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaaga 253  Q
    ||||| |||||| | ||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||    
T  930215 ttcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaa-ctatacaattaggtcaattttcagaaactatagattatgattattgaga 930117  T
Q  254 gatagtctcacccttaccttagttttgcagaa 285  Q
    ||||||||||||||||||||||||||||||||    
T  930116 gatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 12168305 - 12168440
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 12168402  T
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  12168403 ctcacccttaccttagttttgcagaa-aattagacagca 12168440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 298
Target Start/End: Complemental strand, 19785982 - 19785847
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  ||| |||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaa-ctattcaactaggtcaattt-cagaaattatagattatgattattgagagatagt 19785885  T
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  19785884 ctcacccttaccttagttttgcagaa-aattagacagca 19785847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 19878398 - 19878533
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 19878495  T
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  19878496 ctcacccttaccttagttttgcagaa-aattagacagca 19878533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 19287214 - 19287337
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 19287311  T
Q  260 ctcacccttaccttagttttgcagaa 285  Q
    ||||||||||||||||||||||||||    
T  19287312 ctcacccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 19884174 - 19884309
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 19884271  T
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||| ||||||||||||||||| ||||| ||||||    
T  19884272 ctcaccctaaccttagttttgcagaa-aattagacagca 19884309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  191 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34640069 ttattttccaaaa-ctattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 34646743 - 34646660
Alignment:
Q  191 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34646743 ttattttccaaaat-tattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 24512899 - 24512794
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 318  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||| |||||||||  ||| ||||||| ||||| ||  ||||||||     
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 24512800  T
Q  319 ctctct 324  Q
    ||||||    
T  24512799 ctctct 24512794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 25469785 - 25469704
Alignment:
Q  191 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||| | || ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  25469785 ttattttccaaaacc-attcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 21565392 - 21565214
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| ||||| |||||||| | || ||||||||||| || ||||||||||| || ||||  ||||| | |||||| ||||||| ||||||||||||||||    
T  21565392 atagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaattt 21565294  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatg-attattaagagatagtctcacccttacct 272  Q
     | | |  ||   || |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  21565293 -tatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 31252406 - 31252478
Alignment:
Q  203 aactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    |||||| ||||||| | ||||||||||||||||| ||||| || ||||| ||||| |||||||||||||||||    
T  31252406 aactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  222 ttttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    |||||||||||||| |||| |||||||| ||| |||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 111561 - 111741
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||    
T  111561 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 111659  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  111660 attttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 12026 - 11840
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| | || | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||    
T  12026 ttaagttttcattctgaagattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattt 11928  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11927 tccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 151 - 285
Target Start/End: Complemental strand, 875 - 740
Alignment:
Q  151 ccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattatt 249  Q
    ||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  875 ccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattatt 776  T
Q  250 aagagatagtctcacccttaccttagttttgcagaa 285  Q
     |||||||||||||||||||||||||||||||||||    
T  775 gagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 10376 - 10195
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| ||||||    
T  10376 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 10278  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10277 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 1706 - 1525
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| ||||||    
T  1706 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 1608  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  1607 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 99 - 298
Target Start/End: Original strand, 111761 - 111960
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |    
T  111761 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatct 111859  T
Q  197 tccaaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacaca 295  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||    
T  111860 tccaaaa-ctatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aattagaca 111957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 298
Target Start/End: Original strand, 26583715 - 26583904
Alignment:
Q  106 ttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaa 204  Q
    ||||||||| ||||||| |||||| || | ||||||||| || |||| |||||| |||||||| ||||||| |||||||||||||||||||||||||||     
T  26583715 ttcattctgaacatcactttacaa-catatttaacatgatcattaccctttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaa- 26583812  T
Q  205 ctatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  26583813 ctatgcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 26583904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 6483593 - 6483772
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||    
T  6483593 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 6483691  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6483692 attttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 6487060 - 6487239
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||    
T  6487060 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 6487158  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6487159 attttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 19661633 - 19661454
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||    
T  19661633 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 19661535  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  19661534 atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 5706106 - 5706023
Alignment:
Q  191 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||    
T  5706106 ttatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattaatgagagatagtctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 23265093 - 23265197
Alignment:
Q  171 catcaaccctaaccctcaatttat-tttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcaccctta 269  Q
    ||||||||||||  |||||||| | ||| ||| ||| || ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  23265093 catcaaccctaattctcaatttttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcaccctta 23265192  T
Q  270 cctta 274  Q
    |||||    
T  23265193 cctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 23280161 - 23280265
Alignment:
Q  171 catcaaccctaaccctcaatttat-tttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcaccctta 269  Q
    ||||||||||||  |||||||| | ||| ||| ||| || ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  23280161 catcaaccctaattctcaatttttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcaccctta 23280260  T
Q  270 cctta 274  Q
    |||||    
T  23280261 cctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 94 - 272
Target Start/End: Original strand, 23878883 - 23879060
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccat-ttcccgtcagaatcgtcatcaaccctaaccctcaattt 192  Q
    |||| ||||| |||||||||| |||||||||||||| || ||||||||||| || ||||   ||||| |||||||| ||| |||||||||||||||||||    
T  23878883 atagattaagatttcattctgaacatcacattacaa-cataattaacatgatcattaccccattcccctcagaatcatcaacaaccctaaccctcaattt 23878981  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    |  | |  ||   || |||||||||||||||||  ||||||||| || || |||| | ||||||||||||||||||||||    
T  23878982 a-atcctcaaggttaagcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 21908311 - 21908414
Alignment:
Q  171 catcaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttac 270  Q
    |||||||||||| || ||||||  | ||||| ||| ||  | |||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  21908311 catcaaccctaatccccaattttatatccaagaacaatatacttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttac 21908410  T
Q  271 ctta 274  Q
    ||||    
T  21908411 ctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 23101643 - 23101463
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatc-aaccctaaccctcaattt 192  Q
    |||| ||||| |||||||| | || ||||||||||| || ||||||||||| || ||||  ||||| |||||||| ||||| ||||||||||||||||||    
T  23101643 atagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt 23101545  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacctta 274  Q
     | | |  ||   ||  ||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||||    
T  23101544 -tatcctcaaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 23089235 - 23089057
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| ||||| |||||||| | || ||||||||||| || ||||||||||| || ||||  ||||| | |||||| ||||||| ||||||||||||||||    
T  23089235 atagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaattt 23089137  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatg-attattaagagatagtctcacccttacct 272  Q
     | | |  ||   || |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  23089136 -tatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 6260186 - 6260142
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  6260186 ctcacccttaccttagttttgcagaatgattacacagcacaatcg 6260142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 26885139 - 26885246
Alignment:
Q  176 accctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    |||||||  |||||||| || ||||| |||||| | ||||| | ||||||||||||||||| |||| ||||||| | ||||| || ||||||||||||||    
T  26885139 accctaattctcaattttttctccaagaactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttag 26885237  T
Q  276 ttttgcaga 284  Q
      |||||||    
T  26885238 aattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 19665081 - 19665044
Alignment:
Q  267 ttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||  |||||||||||||||||    
T  19665081 ttaccttagttttgcagaatgattacacagcacaatcg 19665044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 44477498 - 44477678
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||    
T  44477498 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 44477596  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44477597 attttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 44492656 - 44492836
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||    
T  44492656 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 44492754  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44492755 attttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 8727913 - 8727735
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaattt 192  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  | ||| |||||||| || |||| ||||||||||||||||    
T  8727913 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccctcaattt 8727815  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  8727814 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 285
Target Start/End: Original strand, 23866494 - 23866680
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    ||||||||  |||||| |||| | |||||||| ||||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||    
T  23866494 ttaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattt 23866593  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    ||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  23866594 tccaaaa-ctatgcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 17054533 - 17054656
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-caggaattatagattatgattattgagagatagt 17054630  T
Q  260 ctcacccttaccttagttttgcagaa 285  Q
    |||||||||||||| |||||||||||    
T  17054631 ctcacccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 304
Target Start/End: Complemental strand, 27941034 - 27940822
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatt- 191  Q
    |||| |||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||  | |||||     
T  27941034 atagattaaattttcattctgaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaattcccaattc 27940936  T
Q  192 -tattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaatt 290  Q
     |||||| ||| ||| || | | |    |||||||||||||| ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  |||    
T  27940935 ttatttttcaagaacaattctaatcaaacaattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgatt 27940836  T
Q  291 acacagcacaatcg 304  Q
    ||||||||||||||    
T  27940835 acacagcacaatcg 27940822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 14056619 - 14056514
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 318  Q
    |||||||||||| ||| | | ||| |||||| ||||||||||||||||||||||||| |||||||||  ||| |||| || ||||| ||  ||||||||     
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaaagattgcacaacaaaatcggttcctaggctctt 14056520  T
Q  319 ctctct 324  Q
    ||||||    
T  14056519 ctctct 14056514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 25111976 - 25112081
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 318  Q
    |||||||||||| ||| | | ||| |||||| ||||||||||||||||||||||||| |||| ||||  ||| |||| || ||||| ||  ||||||||     
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaaagattgcacaacaaaatcggtttctaggctctt 25112075  T
Q  319 ctctct 324  Q
    ||||||    
T  25112076 ctctct 25112081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||| | |||||||||||| | ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 30765925 - 30765880
Alignment:
Q  259 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||||||||||  || | ||||||||||||    
T  30765925 tctcacccttaccttagttttgcagaaagataaaacagcacaatcg 30765880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||| ||||| ||||| || ||| |||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 282
Target Start/End: Original strand, 1058 - 1240
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| ||| |||| ||||||| ||||||||||||||||||||    
T  1058 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattt 1156  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgca 282  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1157 tccaaaa-ctatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 282
Target Start/End: Original strand, 50059 - 50241
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||||| || |||| ||||||| ||| |||| ||||||| ||||||||||||||||||||    
T  50059 ttaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattt 50157  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgca 282  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50158 tccaaaa-ctatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 201 - 324
Target Start/End: Original strand, 30839 - 30962
Alignment:
Q  201 aaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  30839 aaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaggattacacagcaaa 30938  T
Q  301 atcgtttaataggctctcctctct 324  Q
    |||| ||  |||||||||||||||    
T  30939 atcgattcctaggctctcctctct 30962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 134 - 298
Target Start/End: Original strand, 206 - 368
Alignment:
Q  134 aattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaat 232  Q
    ||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  206 aattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-cagaaat 303  T
Q  233 tatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 298  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  304 tatagattatggttattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 8046007 - 8045822
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||||||  ||||||||||| | |  |||| ||||||| |||||||  || |||| ||||||||||||||||||||    
T  8046007 ttaagttttcattctgaacattatattacaag-agaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattt 8045909  T
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  8045908 tccaaaa-ctatgcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 99 - 298
Target Start/End: Original strand, 11847987 - 11848191
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcc-cgtcagaatcgtcatcaa-ccctaaccctcaatttattt 196  Q
    |||||||||||||||| |||| | |||| ||| || |||||||||| || ||||  |||| | |||||||||||||||| ||||||||||||||| ||||    
T  11847987 ttaagttttcattctgaacattatattataaa-aggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattt 11848085  T
Q  197 tcca-----aaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaatta 291  Q
    |        |||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  11848086 taatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aatta 11848184  T
Q  292 cacagca 298  Q
     ||||||    
T  11848185 gacagca 11848191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 53483677 - 53483760
Alignment:
Q  191 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  53483677 ttatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 15408139 - 15408244
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 318  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| | |||||||  ||| ||||| | ||||| ||  ||||||||     
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaaagattgcacagaaaaatcggttcctaggctctt 15408238  T
Q  319 ctctct 324  Q
    ||||||    
T  15408239 ctctct 15408244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttacct 272  Q
    ||||||||||||||||| |||||||| ||| |  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||| ||| ||| |||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcaccctta 269  Q
    |||||||||||||||| || | ||| |||||| |||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 1650219 - 1650182
Alignment:
Q  260 ctcacccttaccttagttttgcag-aagaattacacag 296  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1650219 ctcacccttaccttagttttgcagaaagaattacacag 1650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  239 ttatgattattaagagatagtctcacccttaccttagttttg 280  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||| ||| ||| |||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 2072 - 1887
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttatttt 197  Q
    ||||||||||||| || |||| | |||||||  ||||||||||| | || ||||  ||||  ||| |||| ||||||| ||||||||||||| |||||||    
T  2072 ttaagttttcattatgaacattaaattacaag-agaattaacataatcattacccattcca-tcaaaatcatcatcaaaccctaaccctcaaattatttt 1975  T
Q  198 ccaaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1974 ccaaaa-ctatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 8749 - 8564
Alignment:
Q  99 ttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttatttt 197  Q
    ||||||||||||| || |||| | |||||||  ||||||||||| | || ||||  ||||  ||| |||| ||||||| ||||||||||||| |||||||    
T  8749 ttaagttttcattttgaacattaaattacaag-agaattaacataatcattacccattcca-tcataatcatcatcaaaccctaaccctcaaattatttt 8652  T
Q  198 ccaaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8651 ccaaaa-ctatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 916 - 991
Alignment:
Q  204 actatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 279  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  916 actatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 8061 - 8136
Alignment:
Q  204 actatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 279  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8061 actatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 1845 - 1727
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctattcaattaggtcaattt-caggaattatagattatgattattgagagatagt 1748  T
Q  260 ctcacccttaccttagttttg 280  Q
    |||||||||||||||||||||    
T  1747 ctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 5868 - 5750
Alignment:
Q  161 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 259  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctattcaattaggtcaattt-caggaattatagattatgattattgagagatagt 5771  T
Q  260 ctcacccttaccttagttttg 280  Q
    |||||||||||||||||||||    
T  5770 ctcacccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 45357 - 45268
Alignment:
Q  191 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgc 281  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  45357 ttatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 40587 - 40482
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 318  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||  ||| ||||||| ||||| ||  ||||||||     
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 40488  T
Q  319 ctctct 324  Q
    ||||||    
T  40487 ctctct 40482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 135473 - 135578
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 318  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||| |||||  ||| ||||||| ||||| ||  ||||||||     
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaaagattgcacagcaaaatcggttcttaggctctt 135572  T
Q  319 ctctct 324  Q
    ||||||    
T  135573 ctctct 135578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 22646 - 22543
Alignment:
Q  221 attttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctcct 320  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||||||||| | |||||||||  ||| ||||||| ||||| ||  |||||||| ||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaaatattgcacagcaaaatcggttcctaggctcttct 22547  T
Q  321 ctct 324  Q
    ||||    
T  22546 ctct 22543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 3474 - 3295
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatga-ccagtaccatttcccgtcagaatcgtcatc-aaccctaaccctcaatt 191  Q
    |||| ||||| |||||||||| |||||||||||| |||| |||||||||||  || ||||  ||||| |||||||| ||||| |||||||||||||||||    
T  3474 atagattaagatttcattctgaacatcacattac-aacaaaattaacatgattcattacccattcccctcagaatcatcatcaaaccctaaccctcaatt 3376  T
Q  192 tattttccaaaaactatgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacct 272  Q
    | | | || ||   || |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  3375 t-tatccccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 17643 - 17723
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag-ttttgcagaagaattacacagca 298  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 17723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 3802 - 3624
Alignment:
Q  94 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatc-aaccctaaccctcaattt 192  Q
    |||| ||||| |||||||| | |||||||||||| |||| ||||||||||| || ||||  | ||| |||||||| ||||| ||||||||||||||||||    
T  3802 atagattaagatttcattccgaacatcacattac-aacataattaacatgatcattacccatccccctcagaatcatcatcaaaccctaaccctcaattt 3704  T
Q  193 attttccaaaaactatgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacct 272  Q
     | | |  ||   || |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  3703 -tatcctcaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

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Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  210 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||| ||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

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Target: scaffold0124 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

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Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  223 tttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    |||||||||||||| |||| ||| ||| |||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

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Target: scaffold2054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 680 - 780
Alignment:
Q  185 ctcaatttattttccaaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcag 283  Q
    |||||||||||||| || |||||| |  |||||| |||||| ||||||||||| |||| ||| ||| | ||||| || ||||||||||||||||||||||    
T  680 ctcaatttattttc-aagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcag 778  T
Q  284 aa 285  Q
    ||    
T  779 aa 780  T

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Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

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Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  211 aattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||| |||||||||| |||||||| || ||||| ||| | ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  219 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

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Target: scaffold0139; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 26892 - 26930
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    |||||||||||||||||||||||||| || |||||||||    
T  26892 ctcacccttaccttagttttgcagaaaaaatacacagca 26930  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 493105 - 493019
Alignment:
Q  197 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcaga 284  Q
    ||||| |||||| | ||||| | ||||||||||||||||| |||| ||||||| | ||||| |||||||||||||||||  |||||||    
T  493105 tccaagaactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

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Target: scaffold0261 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 23624 - 23559
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 285  Q
    ||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||  ||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcagaa 23559  T

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Target: scaffold0790 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 5487 - 5519
Alignment:
Q  253 agatagtctcacccttaccttagttttgcagaa 285  Q
    |||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaa 5519  T

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Target: scaffold0609 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 5929 - 5857
Alignment:
Q  203 aactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    |||||| ||||||| | ||||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  5929 aactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

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Target: scaffold0348 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 14668 - 14604
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctcctctct 324  Q
    |||||||||||||||| |||||||||  ||| ||||||| ||||| || ||||||||| ||||||    
T  14668 ctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcataggctcttctctct 14604  T

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Target: scaffold0348; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttt 278  Q
    ||||||||| ||||||||| |||||||| ||| |||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||| | ||||||||||||   ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||||||||||| ||||||| |||| | ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  220 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||||||| ||||||| |||| | ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 46746 - 46708
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaattacacagca 298  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  46746 ctcacccttaccttagttttgcagaagaaatgcacagca 46708  T

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Target: scaffold0067; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 55761 - 55733
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaa 288  Q
    |||||||||||||||||||||||||||||    
T  55761 ctcacccttaccttagttttgcagaagaa 55733  T

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Target: scaffold0067; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 62147 - 62119
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaa 288  Q
    |||||||||||||||||||||||||||||    
T  62147 ctcacccttaccttagttttgcagaagaa 62119  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 2256 - 2219
Alignment:
Q  267 ttaccttagttttgcagaagaattacacagcacaatcg 304  Q
    |||||||||||||||||||  |||||||||||||||||    
T  2256 ttaccttagttttgcagaatgattacacagcacaatcg 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 13970 - 13894
Alignment:
Q  200 aaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttag 275  Q
    ||||||||| ||||||| | |||||| ||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  13970 aaaaactattcaattagattaatttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 13894  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  218 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 274  Q
    ||||||||||||| ||||| ||||| || ||| |||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 266108 - 266136
Alignment:
Q  260 ctcacccttaccttagttttgcagaagaa 288  Q
    |||||||||||||||||||||||||||||    
T  266108 ctcacccttaccttagttttgcagaagaa 266136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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