View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_25 (Length: 311)
Name: NF0661_low_25
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 27660837 - 27661121
Alignment:
| Q |
1 |
aaaagaaatataatttcaaaggcaaattaattgttttacctttttactcgtagccatcaaaatgcagagaaaacaaaatcagtagcacaacacatcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27660837 |
aaaagaaatataatttcaaaggcaaattaattgttttacctttttactcgtagccatcaaaatgcagagaaaacaaaatcagtagcacaacacatcaatg |
27660936 |
T |
|
| Q |
101 |
agaatgaaaagattgaactcnnnnnnnnnnnnnnnnnnnnncatattgaactcaaaacagatttaacatcaacataatacaatgcacacagactccacga |
200 |
Q |
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|||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27660937 |
agaatgaaaatattgaactccaacacaacacaacac-----catattcaactcaaaacagatttaacatcaacataatacaatgcacacagactccatga |
27661031 |
T |
|
| Q |
201 |
cgaccggcgacgacatctctgttaccaacgccggtgaatactaccatatttcagatagagagtgaggacgaacggatctccatgatgatg |
290 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27661032 |
cgaccggtgacaacatctctgttaccaacgccggtgaatactaccatatttcagatagagagtgaggacgaacggatctccatgatgatg |
27661121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37600885 - 37600608
Alignment:
| Q |
1 |
aaaagaaatataatttcaaaggcaaattaattgttttacctttttactcgtagccatcaaaatgcagagaaaacaaaatcagtagcacaacacatcaatg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37600885 |
aaaagaaatataatttcaaagacaaattaaatgttttacctttttacccgtagccatcaaaattcagagaaaacaaaatcagtagcacaacacatcaatg |
37600786 |
T |
|
| Q |
101 |
agaatgaaaagattgaactcnnnnnnnnnnnnnnnnnnnnncatattgaactcaaaacagatttaacatcaacataatacaatgcacacagactccacga |
200 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
37600785 |
agagtgaaaagattgaactccaacacaacac----------catattgaactcaaaacagatt-aacatcaacataatacaatgcacacagactccatga |
37600697 |
T |
|
| Q |
201 |
cgaccggcgacgacatctctgttaccaacgccggtgaatactaccatatttcagatagagagtgaggacgaacggatctccatgatgat |
289 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37600696 |
tgaccaacgacgacgtctctgttaccaacgccggtgaatactaccagattttagatagagagtgaggacgaacggatctccatgatgat |
37600608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5745368 - 5745412
Alignment:
| Q |
1 |
aaaagaaatataatttcaaaggcaaattaattgttttaccttttt |
45 |
Q |
| |
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|||||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
5745368 |
aaaagaaatatagtttcaaagggaaattaaatgttttaccttttt |
5745412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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