View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_28 (Length: 297)
Name: NF0661_low_28
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 38 - 246
Target Start/End: Original strand, 49104840 - 49105051
Alignment:
| Q |
38 |
tgttgcgcatttatttacttcgataaaatgtctttttaatgtgggactcataacacaatattcggtgacagtatgaaaacgggnnnnnnnnn---ctaat |
134 |
Q |
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| T |
49104840 |
tgttgcgcatttatttacttcgataaaatgtctttttaatgtgggactcataacacaatattcggtgacagtatgaaaacgggaagaaaaaaaaactatt |
49104939 |
T |
|
| Q |
135 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104940 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
49105039 |
T |
|
| Q |
235 |
tccccatcatgt |
246 |
Q |
| |
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|||||||||||| |
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| T |
49105040 |
tccccatcatgt |
49105051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 18133629 - 18133740
Alignment:
| Q |
135 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
234 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||| |
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| T |
18133629 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
18133728 |
T |
|
| Q |
235 |
tccccatcatgt |
246 |
Q |
| |
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|||||||||||| |
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|
| T |
18133729 |
tccccatcatgt |
18133740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 49120839 - 49120950
Alignment:
| Q |
135 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
234 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||| |
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|
| T |
49120839 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
49120938 |
T |
|
| Q |
235 |
tccccatcatgt |
246 |
Q |
| |
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|||||||||||| |
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| T |
49120939 |
tccccatcatgt |
49120950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 6955108 - 6954995
Alignment:
| Q |
133 |
atacctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatc |
232 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| || ||||| |||||||||||||| ||||| |
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|
| T |
6955108 |
atacctgttctataattggaagatatccaccaacattaggaagtatggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatc |
6955009 |
T |
|
| Q |
233 |
tctccccatcatgt |
246 |
Q |
| |
|
|||||||||||||| |
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|
| T |
6955008 |
tctccccatcatgt |
6954995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 6964791 - 6964723
Alignment:
| Q |
178 |
tggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctctccccatcatgt |
246 |
Q |
| |
|
||||||||||||| || |||||||| || ||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
6964791 |
tggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgt |
6964723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 6965232 - 6965185
Alignment:
| Q |
133 |
atacctgatctataattggaagatatccaccaacatttgggagtatgg |
180 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||| ||||||| |
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|
| T |
6965232 |
atacctgttcaatgattggaagatatccaccaacatttggaagtatgg |
6965185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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